createReport: Create report of RNAseq DEG anlaysis

Description Usage Arguments Value

View source: R/report.R

Description

This function get the count matrix, pvalues, and FC of a DEG analysis and create a report to help to detect possible problems with the data.

Usage

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createReport(g1, g2, counts, tags, pvalues, fc, path, colors = "",
  pop = 400, name = "DEGreport", ncores = NULL)

Arguments

g1

group 1

g2

group 2

counts

matrix with counts for each samples and each gene. Should be same length than pvalues vector.

tags

genes of DEG analysis

pvalues

pvalues of DEG analysis

fc

FC for each gene

path

path to save the figure

colors

data frame with colors for each gene

pop

random genes for background

name

name of the html file

ncores

num cores to be used to create report

Value

create a html file with all figures and tables


Bioconductor-mirror/DEGreport documentation built on July 7, 2017, 10:53 p.m.