degRank: Get rank data frame with best score on the top

Description Usage Arguments Value Examples

View source: R/methods.R

Description

Get rank data frame with best score on the top

Usage

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degRank(g1, g2, counts, fc, popsize = 400, iter = 1000, ncores = NULL)

Arguments

g1

list of samples in group 1

g2

list of samples in group 2

counts

count matrix for each gene and each sample that is deregulated

fc

list of FC of deregulated genes. Should be same length than counts row.names

popsize

number of combinations to generate

iter

number of iteration in the mcmc model

ncores

number of cores to use

Value

data frame with the output of degBIcmd for each gene

Examples

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data(DEGreportSet)
#library(rjags)
#degRank(DEGreportSet$g1,DEGreportSet$g2,
#    DEGreportSet$counts[DEGreportSet$detag[1:5],],
#    DEGreportSet$deg[DEGreportSet$detag[1:5],1],400,500)

Bioconductor-mirror/DEGreport documentation built on July 7, 2017, 10:53 p.m.