DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

Global functions | |
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DEanalysis | Source code |

DEsubs | Man page Source code |

TSPM | Source code |

changeAnnotation | Source code |

constructNetwork | Source code |

dir.create.rec | Source code |

doCirclize | Source code |

fillMatrixList | Source code |

geneVisualization | Man page Source code |

getDefaultReferences | Source code |

getExternalMeasures | Source code |

getFunctionalMeasures | Source code |

getFunctionalNodes | Source code |

getLengths | Source code |

getTopologicalHandlers | Source code |

loadTermData | Source code |

matrixVisualization | Source code |

measureToNodes | Source code |

onAttach | Source code |

onLoad | Source code |

onUnload | Source code |

ontologicalMeasures | Source code |

organismVisualization | Man page Source code Source code |

pruneEdges | Source code |

pruneNetwork | Source code |

subLevelMeasures | Source code |

subpathwayAnalysis | Source code |

subpathwayToGraph | Man page Source code |

subpathwayTypes | Man page Source code Source code |

subpathwayVisualization | Man page Source code Source code |

topologicalMeasures | Source code |

unlistToMatrix | Source code |

visMatrix.barplot | Source code |

visMatrix.dotplot | Source code |

visMatrix.heatmap | Source code |

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