Dispersion shrinkage for sequencing data.

callDML | Function to detect differntially methylated loci (DML) for... |

callDMR | Function to detect differntially methylated regions (DMR) for... |

dispersion | Acessor functions for the 'dispersion' slot in a SeqCountData... |

DMLfit.multiFactor | Fit a linear model for BS-seq data from general experimental... |

DMLtest | Function to perform statistical test of differntially... |

DMLtest.multiFactor | Perform statistical test for BS-seq data from general... |

DSS.DE | Perform RNA-seq differential expression analysis in two-group... |

DSS-package | Dispersion shrinkage for sequencing data |

estDispersion | Estimate and shrink tag-specific dipsersions |

estNormFactors | Estimate normalization factors |

makeBSseqData | Create an object of BSseq class from several data frames. |

normalizationFactor | Accessor functions for the 'normalizationFactor' slot in a... |

SeqCountSet-class | Class '"SeqCountSet"' - container for count data from... |

seqData | A simulated 'SeqCountData' object. |

showOneDMR | Visualze the count data for one DMR |

waldTest | Perform gene-wise Wald test for two group comparisons for... |

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