API for Bioconductor-mirror/EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysis

Global functions
GS.format.dataframe.to.list Source code
GSEA Source code
GSEA.EnrichmentScore Source code
GSEA.EnrichmentScore2 Source code
GSEA.GeneRanking Source code
SAMGS Source code
anno.p2g Source code
anno.pkg.2.org Source code
approx.pval Source code
auto.create.gsets Source code
auto.detect.data.type Source code
auto.detect.gs.type Source code
autoDetectGeneIdType Source code
availableOrgPkgs Source code
cepa Source code
clipper Source code
comb.ea.results Man page Source code
comb.ranks Source code
comp.de Source code
compile.grn.from.kegg Man page Source code
config.ebrowser Man page Source code
construct.ggea.graph Source code
create.index Source code
de.ana Man page Source code
degraph Source code
determine.edge.color Source code
determine.edge.lwd Source code
determine.node.color Source code
download.kegg.genesets Source code
download.kegg.pathways Man page Source code
ea.browse Man page Source code
ebm Source code
ebrowser Man page Source code
exprs.heatmap Man page Source code
extr.pwy.dat Source code
extract.kegg.genesets Source code
extract.pwys Source code
fisher.comb Source code
ganpa Source code
gene.report Source code
gene.table Source code
get.edge.type Source code
get.gene.annotation Source code
get.gene.freq.weights Source code
get.genes.by.pathway Source code
get.go.genesets Man page Source code
get.html.of.marked.pathway Source code
get.kegg.display.name Source code
get.kegg.genesets Man page Source code
get.kegg.rels.of.organism Source code
get.node.name Source code
get.ranks Source code
getOrgIdType Source code
ggea Man page Source code
ggea.graph Man page Source code
ggea.graph.legend Man page Source code
global.GSA Source code
global.GSEA Source code
global.PADOG Source code
global.SAMGS Source code
globaltest Source code
gmt2cmat Source code
grn2adjm Source code
grn2gnet Source code
gs.list.2.gs.coll Source code
gs.ranking Man page Source code
gsa Source code
gsea Man page Source code
gsva Source code
id.types Man page Source code
is.consistent Source code
is.sig Source code
is.wholenumber Source code
local.de.ana Source code
local.s2n Source code
local.t.SAM Source code
make.example.data Man page Source code
make.exmpl.ea.res Source code
make.exmpl.eset Source code
make.exmpl.grn Source code
make.exmpl.gs Source code
make.ggraph.html Source code
make.gs.names Source code
make.hmap.html Source code
make.kgraph.html Source code
make.kpath.html Source code
make.spia.data Source code
make.view Source code
make.volc.html Source code
map.ids Man page Source code
mgsa Source code
na.treat Source code
nbea Man page Source code
nbea.methods Man page Source code
ncbi.gene.link Source code
nea Source code
netgsa Source code
normalize Man page Source code
onLoad Source code
ora Man page Source code
ora.hyperg Source code
org2pkg Source code
padog Source code
parse.genesets.from.GMT Man page Source code
pathnet Source code
pathview2 Source code
pdistr Man page Source code
perm.edges.pval Source code
perm.genes.pval Source code
perm.samples.pval Source code
plot.ggea.graph Source code
prep.gsets Source code
probe.2.gene.eset Man page Source code
pruneGRN Source code
pubmed.link Source code
query.grn Source code
read.eset Man page Source code
read.grn Source code
roast.camera Source code
rowMeansVars Source code
rseq.sbea Source code
sAvailable Source code
sam.TlikeStat Source code
sbea Man page Source code
sbea.methods Man page Source code
score.grn Source code
set.out.dir Source code
spia Source code
stouffer.comb Source code
topogsa Source code
transform.grn Source code
transform.gs Source code
view.graph Source code
view.path Source code
view.set Source code
volcano Man page Source code
write.gmt Source code
Bioconductor-mirror/EnrichmentBrowser documentation built on Aug. 2, 2017, 3:29 p.m.