Seamless navigation through combined results of set-based and network-based enrichment analysis

Global functions | |
---|---|

GS.format.dataframe.to.list | Source code |

GSEA | Source code |

GSEA.EnrichmentScore | Source code |

GSEA.EnrichmentScore2 | Source code |

GSEA.GeneRanking | Source code |

SAMGS | Source code |

anno.p2g | Source code |

anno.pkg.2.org | Source code |

approx.pval | Source code |

auto.create.gsets | Source code |

auto.detect.data.type | Source code |

auto.detect.gs.type | Source code |

autoDetectGeneIdType | Source code |

availableOrgPkgs | Source code |

cepa | Source code |

clipper | Source code |

comb.ea.results | Man page Source code |

comb.ranks | Source code |

comp.de | Source code |

compile.grn.from.kegg | Man page Source code |

config.ebrowser | Man page Source code |

construct.ggea.graph | Source code |

create.index | Source code |

de.ana | Man page Source code |

degraph | Source code |

determine.edge.color | Source code |

determine.edge.lwd | Source code |

determine.node.color | Source code |

download.kegg.genesets | Source code |

download.kegg.pathways | Man page Source code |

ea.browse | Man page Source code |

ebm | Source code |

ebrowser | Man page Source code |

exprs.heatmap | Man page Source code |

extr.pwy.dat | Source code |

extract.kegg.genesets | Source code |

extract.pwys | Source code |

fisher.comb | Source code |

ganpa | Source code |

gene.report | Source code |

gene.table | Source code |

get.edge.type | Source code |

get.gene.annotation | Source code |

get.gene.freq.weights | Source code |

get.genes.by.pathway | Source code |

get.go.genesets | Man page Source code |

get.html.of.marked.pathway | Source code |

get.kegg.display.name | Source code |

get.kegg.genesets | Man page Source code |

get.kegg.rels.of.organism | Source code |

get.node.name | Source code |

get.ranks | Source code |

getOrgIdType | Source code |

ggea | Man page Source code |

ggea.graph | Man page Source code |

ggea.graph.legend | Man page Source code |

global.GSA | Source code |

global.GSEA | Source code |

global.PADOG | Source code |

global.SAMGS | Source code |

globaltest | Source code |

gmt2cmat | Source code |

grn2adjm | Source code |

grn2gnet | Source code |

gs.list.2.gs.coll | Source code |

gs.ranking | Man page Source code |

gsa | Source code |

gsea | Man page Source code |

gsva | Source code |

id.types | Man page Source code |

is.consistent | Source code |

is.sig | Source code |

is.wholenumber | Source code |

local.de.ana | Source code |

local.s2n | Source code |

local.t.SAM | Source code |

make.example.data | Man page Source code |

make.exmpl.ea.res | Source code |

make.exmpl.eset | Source code |

make.exmpl.grn | Source code |

make.exmpl.gs | Source code |

make.ggraph.html | Source code |

make.gs.names | Source code |

make.hmap.html | Source code |

make.kgraph.html | Source code |

make.kpath.html | Source code |

make.spia.data | Source code |

make.view | Source code |

make.volc.html | Source code |

map.ids | Man page Source code |

mgsa | Source code |

na.treat | Source code |

nbea | Man page Source code |

nbea.methods | Man page Source code |

ncbi.gene.link | Source code |

nea | Source code |

netgsa | Source code |

normalize | Man page Source code |

onLoad | Source code |

ora | Man page Source code |

ora.hyperg | Source code |

org2pkg | Source code |

padog | Source code |

parse.genesets.from.GMT | Man page Source code |

pathnet | Source code |

pathview2 | Source code |

pdistr | Man page Source code |

perm.edges.pval | Source code |

perm.genes.pval | Source code |

perm.samples.pval | Source code |

plot.ggea.graph | Source code |

prep.gsets | Source code |

probe.2.gene.eset | Man page Source code |

pruneGRN | Source code |

pubmed.link | Source code |

query.grn | Source code |

read.eset | Man page Source code |

read.grn | Source code |

roast.camera | Source code |

rowMeansVars | Source code |

rseq.sbea | Source code |

sAvailable | Source code |

sam.TlikeStat | Source code |

sbea | Man page Source code |

sbea.methods | Man page Source code |

score.grn | Source code |

set.out.dir | Source code |

spia | Source code |

stouffer.comb | Source code |

topogsa | Source code |

transform.grn | Source code |

transform.gs | Source code |

view.graph | Source code |

view.path | Source code |

view.set | Source code |

volcano | Man page Source code |

write.gmt | Source code |

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