Files in Bioconductor-mirror/FGNet
Functional Gene Networks derived from biological enrichment analyses

DESCRIPTION
NAMESPACE
NEWS
R/0_FGNet_GUI.R R/0_FGNet_report.R R/1a_fea_david.R R/1a_fea_gage.R R/1a_fea_gtLinker.R R/1a_fea_gtLinker_getResults.R R/1a_fea_topGO.R R/1b_format_david.R R/1b_format_feaResults.R R/1c_readGeneTermSets.R R/2_fea2incidMat.R R/3_analyzeNetwork.R R/3_clustersDistance.R R/3_functionalNetwork.R R/GUI_auxFunctions.R R/GUI_tabFEA.R R/GUI_tabFEA_tabDavid.R R/GUI_tabFEA_tabGage.R R/GUI_tabFEA_tabGtLinker.R R/GUI_tabFEA_tabOther.R R/GUI_tabFEA_tabTopGO.R R/GUI_tabHelp.R R/GUI_tabNetwork.R R/GUI_tabNetwork_common.R R/GUI_tabNetwork_tabOnlyNw.R R/GUI_tabNetwork_tabReport.R R/GUI_tabNetwork_tabSubNw.R R/getTerms.R R/keyWordsTerm.R R/plotGoAncestors.R R/plotKegg.R R/plotSubNetwork.R R/private_SOAPquery.R R/private_addGeneLabels.R R/private_buildGeneSets.R R/private_clustersTable.R R/private_createHTML_FEA_header.R R/private_createHtml.R R/private_getJobName.R R/private_getMGTerms.R R/private_loadInstPkg.R R/private_plotFGNet.R R/private_plotFGNet_bipartite.R R/private_plotFGNet_default.R R/private_queryArgsAsCharacter.R R/private_setColors.R
data/FEA_tools.RData
data/GOEvidenceCodes.RData
data/datalist
data/groupTypes.RData
data/organisms.RData
inst/CITATION
inst/css/functionalNetworks.css
inst/examples/DAVID_Yeast_overl6_raw.txt
inst/examples/DAVID_Yeast_raw.txt
inst/unitTests/test_getResults_david.R inst/unitTests/test_getResults_gtLinker.R man/FGNet-package.Rd man/FGNet_GUI.Rd man/FGNet_report.Rd man/analyzeNetwork.Rd man/clustersDistance.Rd man/data.Rd man/fea2incidMat.Rd man/fea_david.Rd man/fea_gage.Rd man/fea_gtLinker.Rd man/fea_topGO.Rd man/format_david.Rd man/format_results.Rd man/functionalNetwork.Rd man/getTerms.Rd man/keywordsTerm.Rd man/plotGoAncestors.Rd man/plotKegg.Rd man/readGeneTermSets.Rd tests/runTests.R vignettes/FGNet.Rmd
vignettes/FGNet_GUI.png
vignettes/FGNet_workflow.png
vignettes/TermsYeast.png
vignettes/hsa05010_Alzheimer_disease.png
vignettes/nwExample1.png
vignettes/nwExample2.png
vignettes/nwExample3.png
vignettes/ssDavid.png
vignettes/ssGtlinker.png
Bioconductor-mirror/FGNet documentation built on May 29, 2017, 4:16 a.m.