Bioconductor-mirror/FindMyFriends: Microbial Comparative Genomics in R
Version 1.7.0

A framework for doing microbial comparative genomics in R. The main purpose of the package is assisting in the creation of pangenome matrices where genes from related organisms are grouped by similarity, as well as the analysis of these data. FindMyFriends provides many novel approaches to doing pangenome analysis and supports a gene grouping algorithm that scales linearly, thus making the creation of huge pangenomes feasible.

Getting started

Package details

AuthorThomas Lin Pedersen
Bioconductor views Clustering ComparativeGenomics DataRepresentation GenomicVariation GraphAndNetwork SequenceMatching
MaintainerThomas Lin Pedersen <[email protected]>
LicenseGPL (>=2)
Version1.7.0
URL https://github.com/thomasp85/FindMyFriends
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/FindMyFriends")
Bioconductor-mirror/FindMyFriends documentation built on May 29, 2017, 4:16 a.m.