Bioconductor-mirror/FourCSeq: Package analyse 4C sequencing data

FourCSeq is an R package dedicated to the analysis of (multiplexed) 4C sequencing data. The package provides a pipeline to detect specific interactions between DNA elements and identify differential interactions between conditions. The statistical analysis in R starts with individual bam files for each sample as inputs. To obtain these files, the package contains a python script (extdata/python/demultiplex.py) to demultiplex libraries and trim off primer sequences. With a standard alignment software the required bam files can be then be generated.

Getting started

Package details

AuthorFelix A. Klein, EMBL Heidelberg
Bioconductor views Preprocessing Sequencing Software
MaintainerFelix A. Klein <[email protected]>
LicenseGPL (>= 3)
Version1.11.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/FourCSeq")
Bioconductor-mirror/FourCSeq documentation built on July 1, 2017, 5:12 a.m.