Files in Bioconductor-mirror/GGtools
software and data for analyses in genetics of gene expression

DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/Eqappr.R R/alleq.R R/basicappraise.R R/best.trans.eQTLs.R R/bindmaf.R R/binqq.R R/cisConfig.R R/cisEqTools.R R/cisa.R R/eqME.R R/eqtlEstimates.R R/eqtlTests.R R/fdr.all.cis.R R/getFDR.R R/gffprocess.R R/gwSnpTests.R R/harvest.R R/managers.R R/meta.R R/meta.all.R R/meta.transScores.R R/modutils.R R/pifdr.R R/pureSensSoft.R R/relocate.R R/scan.R R/scoredist.R R/seqinfo.R R/snplocsDefault.R R/snpsCisToGenes.R R/summInfra.R R/thinclass.R R/topFeats.R
R/topSnps.R
R/transutils.R R/vcfutils.R
README
TODO.txt
data/b1.rda
data/b2.rda
data/eset.rda
data/hg19.si.df.rda
data/hmm878.rda
data/lgeu.rda
data/strMultPop.rda
inst/CITATION
inst/cloud/ciseqByCluster.R inst/cloud/newtest.R
inst/extpacksupp/DESCRIPTION.proto
inst/extpacksupp/zzz.R
inst/hapmap/relationships_w_pops_051208.txt
inst/hapmap/smallc20CEU.txt.gz
inst/hapmap/src.rel.txt
inst/oldRsrc/X2chunk.R inst/oldRsrc/allS4.R inst/oldRsrc/bestCis.R inst/oldRsrc/bindScores.R inst/oldRsrc/cisFDR.R inst/oldRsrc/cisSnpTests.R inst/oldRsrc/cisgetter.R inst/oldRsrc/clipPCs.R inst/oldRsrc/comb.R inst/oldRsrc/egtset.R inst/oldRsrc/eqtlEstimates.R inst/oldRsrc/exome_minp.R inst/oldRsrc/externalize.R inst/oldRsrc/feqtltests.R inst/oldRsrc/filterCode.R inst/oldRsrc/fullsynth.R inst/oldRsrc/geneRanges.R inst/oldRsrc/geneTrack.R inst/oldRsrc/getTransScores.R inst/oldRsrc/gwSnpScreen.R inst/oldRsrc/interleave2cis.R inst/oldRsrc/machutils.R inst/oldRsrc/minp.R inst/oldRsrc/multff.R inst/oldRsrc/newEQTL.R inst/oldRsrc/pcc.R inst/oldRsrc/permEx.R inst/oldRsrc/probeloc.R inst/oldRsrc/regressOut.R inst/oldRsrc/scoresInRanges.R inst/oldRsrc/shiftRight.R inst/oldRsrc/snp130locs.R inst/oldRsrc/sumDirectors.R inst/oldRsrc/zzz.R inst/oldman/GGtools-package.Rd
inst/oldman/X2chunk.Rd
inst/oldman/best.cis.eQTLs.Rd
inst/oldman/calfig.Rd
inst/oldman/cisProxScores-class.Rd
inst/oldman/cisProxScores.Rd
inst/oldman/clipPCs.Rd
inst/oldman/degnerASE01.Rd
inst/oldman/dropMonomorphies.Rd
inst/oldman/eqtlEstimatesManager-class.Rd
inst/oldman/eqtlFDRtab-class.Rd
inst/oldman/eqtlTests.Rd inst/oldman/eqtlTestsManager-class.Rd
inst/oldman/ex6.Rd
inst/oldman/exome_minp.Rd
inst/oldman/externalize.Rd
inst/oldman/geneIndcol.Rd
inst/oldman/geneRanges.Rd
inst/oldman/genewiseFDRtab.Rd
inst/oldman/gwSnpTests.Rd
inst/oldman/hla2set.Rd
inst/oldman/hmceuB36.2021.Rd
inst/oldman/imphm2_1KG_20.Rd
inst/oldman/m20.Rd
inst/oldman/makeCommonSNPs.Rd
inst/oldman/manhPlot.Rd
inst/oldman/mkCisTransDirector.Rd
inst/oldman/mrefhap2sm.Rd
inst/oldman/multiCisDirector-class.Rd
inst/oldman/pcChooser.Rd
inst/oldman/permEx.Rd
inst/oldman/plot-methods.Rd
inst/oldman/probeLocations.Rd
inst/oldman/relocate.Rd
inst/oldman/sm2ped.Rd
inst/oldman/topSnps-methods.Rd
inst/oldman/transManager-class.Rd inst/oldman/transScores.Rd inst/oldman/transTab.Rd
inst/oldman/vcf2sm-methods.Rd
inst/oldman/vcf2sm.Rd
inst/parts/20.rda
inst/parts/21.rda
inst/provenance/human/doallgzOct17b.R
inst/provenance/human/getall.sh
inst/provenance/human/notes.txt
inst/provenance/mouse/notes.txt
inst/pup/combn238_chr6.pup
inst/rdas/ceu_21.rda
inst/rdas/ceu_22.rda
inst/scripts/lkme.Rnw
inst/scripts/lkme.pdf
inst/vcf/CEU.exon.2010_09.genotypes.vcf.gz
inst/vcf/CEU.exon.2010_09.genotypes.vcf.gz.tbi
inst/vcf/c20exch.vcf.gz
inst/vcf/c20exch.vcf.gz.tbi
inst/vcf/provenance.txt
inst/vcf/valid-4.0.vcf.gz
man/All.cis.Rd man/CisConfig-class.Rd man/EqAppr-class.Rd man/GGtools-package.Rd man/TransConfig-class.Rd man/appraise.Rd man/b1.Rd man/best.cis.eQTLs.Rd man/best.trans.eQTLs.Rd man/bindmaf.Rd man/cgff2dt.Rd man/cisAssoc.Rd man/cisRun-class.Rd man/ciseqByCluster.Rd man/collectBest.Rd man/concatCis.Rd man/eqBox.Rd man/eqsens_dt.Rd man/eqtlTests.Rd man/eqtlTests.me.Rd man/eqtlTestsManager-class.Rd man/ex.Rd man/getCisMap.Rd man/gffprocess.Rd man/gwSnpTests.Rd man/hmm878.Rd man/pifdr.Rd man/qqhex.Rd man/richNull.Rd man/sampsInVCF.Rd man/scoresCis.Rd man/sensanal.Rd man/sensiCisInput-class.Rd man/sensiCisOutput-class.Rd man/simpleTiling.Rd man/snplocsDefault.Rd man/strMultPop.Rd man/transManager-class.Rd man/transScores.Rd man/transTab.Rd man/transeqByCluster.Rd man/vcf2sm.Rd tests/cis.R tests/eqvgwst.R
tests/f2.fdr.rda
tests/f2.score.rda
tests/test.meqtlTests.R tests/test.meta.trans.R tests/testCisMap.R tests/testTrans.R
vignettes/GGtools.Rnw
vignettes/cpne1Brow.pdf
vignettes/ggtvig.bib
Bioconductor-mirror/GGtools documentation built on June 23, 2017, 2:16 p.m.