Bioconductor-mirror/GOTHiC: Binomial test for Hi-C data analysis

This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.

Getting started

Package details

AuthorBorbala Mifsud and Robert Sugar
Bioconductor views Epigenetics HiC Preprocessing Sequencing
MaintainerBorbala Mifsud <[email protected]>
LicenseGPL-3
Version1.13.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/GOTHiC")
Bioconductor-mirror/GOTHiC documentation built on May 29, 2017, 4:21 a.m.