Bioconductor-mirror/GeneNetworkBuilder: Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data
Version 1.19.1

Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.

Getting started

Package details

AuthorJianhong Ou , Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Bioconductor views GraphAndNetwork Microarray Sequencing
MaintainerJianhong Ou <[email protected]>
LicenseGPL (>= 2)
Version1.19.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/GeneNetworkBuilder")
Bioconductor-mirror/GeneNetworkBuilder documentation built on May 29, 2017, 5:16 a.m.