Files in Bioconductor-mirror/GenoGAM
A GAM based framework for analysis of ChIP-Seq data

DESCRIPTION
NAMESPACE
NEWS
R/GenoGAM-class.R R/GenoGAM-package.R R/GenoGAMDataSet-class.R R/GenoGAMSettings-class.R R/GenomicTiles-class.R R/cv.R R/devel.R R/diffBinding.R R/filter.R R/genogam.R R/helper.R R/peakCalling.R R/plotting.R R/qc.R R/readData.R R/sf.R
inst/extdata/Set1/H3K4ME3_Full_length_Set1_Rep_1_YNL176C.bam
inst/extdata/Set1/H3K4ME3_Full_length_Set1_Rep_1_YNL176C.bam.bai
inst/extdata/Set1/H3K4ME3_Full_length_Set1_Rep_2_YNL176C.bam
inst/extdata/Set1/H3K4ME3_Full_length_Set1_Rep_2_YNL176C.bam.bai
inst/extdata/Set1/H3K4ME3_aa762-1080_Set1_Rep_1_YNL176C.bam
inst/extdata/Set1/H3K4ME3_aa762-1080_Set1_Rep_1_YNL176C.bam.bai
inst/extdata/Set1/H3K4ME3_aa762-1080_Set1_Rep_2_YNL176C.bam
inst/extdata/Set1/H3K4ME3_aa762-1080_Set1_Rep_2_YNL176C.bam.bai
inst/extdata/Set1/README
inst/extdata/Set1/experimentDesign.txt
inst/extdata/Set1/fit.rda
man/GenoGAM-class.Rd man/GenoGAM-methods.Rd man/GenoGAM-view.Rd man/GenoGAM.Rd man/GenoGAMDataSet-brackets.Rd man/GenoGAMDataSet-class.Rd man/GenoGAMDataSet.Rd man/GenoGAMDataSetToDataFrame.Rd man/GenoGAMSettings-class.Rd man/GenoGAMSettings.Rd man/GenomicTiles-brackets.Rd man/GenomicTiles-class.Rd man/GenomicTiles-metrics.Rd man/GenomicTiles-view.Rd man/GenomicTiles.Rd man/asDataFrame.Rd man/callPeaks.Rd man/changeSettings.Rd man/checkSettings.Rd man/computeRegionSignificance.Rd man/computeSignificance.Rd man/computeSizeFactors.Rd man/dataRange.Rd man/design.Rd man/filterData.Rd man/fitGenoGAM.Rd man/getChunkIndex.Rd man/getCoordinates.Rd man/getIndex.Rd man/getIndexCoordinates.Rd man/getTile.Rd man/makeTestGenoGAM.Rd man/makeTestGenoGAMDataSet.Rd man/makeTestGenomicTiles.Rd man/plot.GenoGAM.Rd man/qualityCheck.Rd man/sizeFactors.Rd man/subset-GenoGAM-method.Rd man/subset-GenoGAMDataSet-method.Rd man/subset-GenomicTiles-method.Rd man/subsetByOverlaps-GenoGAM-ANY-method.Rd man/subsetByOverlaps-GenoGAMDataSet-GRanges-method.Rd man/subsetByOverlaps-GenomicTiles-GRanges-method.Rd man/tileSettings-elements.Rd man/tileSettings.Rd man/untile.Rd man/writeToBEDFile.Rd
vignettes/GenoGAM.Rnw
vignettes/Overview.png
vignettes/bibliog.bib
vignettes/splines.png
Bioconductor-mirror/GenoGAM documentation built on Aug. 17, 2017, 3:44 p.m.