API for Bioconductor-mirror/GenomicInteractions
R package for handling genomic interaction data

Global functions
GenomicInteractions Man page
GenomicInteractions,ANY,ANY,ANY-method Man page
GenomicInteractions,GInteractions,ANY,ANY-method Man page
GenomicInteractions,GInteractions,numeric,ANY-method Man page
GenomicInteractions,GRanges,GRanges,GenomicRanges_OR_missing-met Man page
GenomicInteractions,GRanges,GRanges,numeric-method Man page
GenomicInteractions,missing,missing,GenomicRanges_OR_missing-met Man page
GenomicInteractions,numeric,numeric,GRanges-method Man page
GenomicInteractions-class Man page
GenomicInteractions-package Man page
InteractionHelpers Man page
InteractionTrack Man page Source code
InteractionTrack-class Man page
anchorOne Man page
anchorOne,GInteractions-method Man page
anchorTwo Man page
anchorTwo,GInteractions-method Man page
annotateAnchors Man page
annotateAnchors,GenomicInteractions,numeric,character,vector-met Man page
annotateInteractions Man page
annotateInteractions,GInteractions,list-method Man page
annotateRegions Man page
annotateRegions,GInteractions,character,vector-method Man page
annotationFeatures Man page
annotationFeatures,GInteractions-method Man page
asBED,GInteractions-method Man page
availableDisplayPars Man page Source code
calculateDistances Man page
calculateDistances,GInteractions-method Man page
capitalize Source code
categoriseInteractions Man page Source code
countsBetweenAnchors Man page
countsBetweenAnchors,GInteractions,GRanges-method Man page
description,GInteractions-method Man page
description<-,GInteractions,ANY-method Man page
export.bed12 Man page
export.bed12,GInteractions-method Man page
export.bedpe Man page
export.bedpe,GInteractions-method Man page
export.chiasig Man page
export.chiasig,GInteractions-method Man page
export.igraph Man page
export.igraph,GInteractions-method Man page
exportName Source code
getNames Source code
getScore Source code
get_binom_ligation_threshold Man page Source code
get_gr_names Source code
get_self_ligation_threshold Man page Source code
getters Man page
hg19.refseq.transcripts Man page
hic_example_data Man page
interactionCounts Man page
interactionCounts,GInteractions-method Man page
interactionCounts<- Man page
interactionCounts<-,GInteractions-method Man page
is.cis Man page
is.cis,GInteractions-method Man page
is.dd Man page
is.dd,GInteractions-method Man page
is.dt Man page
is.dt,GInteractions-method Man page
is.pd Man page
is.pd,GInteractions-method Man page
is.pp Man page
is.pp,GInteractions-method Man page
is.pt Man page
is.pt,GInteractions-method Man page
is.trans Man page
is.trans,GInteractions-method Man page
is.tt Man page
is.tt,GInteractions-method Man page
isInteractionType Man page
isInteractionType,GInteractions-method Man page
makeGenomicInteractionsFromFile Man page Source code
makeRelativeVP Source code
mm9_refseq_promoters Man page
mportHicLib Source code
mportHomer Source code
name Man page
name,GInteractions-method Man page
name<- Man page
name<-,GInteractions-method Man page
plotAvgViewpoint Man page Source code
plotCisTrans Man page Source code
plotCounts Man page Source code
plotDists Man page Source code
plotInteractionAnnotations Man page Source code
plotSummaryStats Man page Source code
plotViewpoint Man page Source code
process.chr Source code
processChiapetName Source code
readBam Source code
readTwoBams Source code
removeDups Man page Source code
resetAnnotations Man page
resetAnnotations,GInteractions-method Man page
sEqualSeqInfo Source code
sameStrand Man page Source code
setters Man page
subsetByFeatures Man page
subsetByFeatures,GInteractions,GRanges,missing-method Man page
subsetByFeatures,GInteractions,GRangesList,missing-method Man page
subsetByFeatures,GInteractions,character,character-method Man page
sum,GInteractions-method Man page
summariseByFeaturePairs Man page
summariseByFeaturePairs,GInteractions-method Man page
summariseByFeatures Man page
summariseByFeatures,GInteractions-method Man page
thymus_enh Man page
updateObject,GenomicInteractions-method Man page
validateInput Source code
viewPoint Man page Source code
Bioconductor-mirror/GenomicInteractions documentation built on June 23, 2017, 6:23 p.m.