export.chiasig: Export interactions in a BEDPE-like format for use with...

Description Usage Arguments Value Examples

Description

Exports a GInteractions object to BEDPE like format, (anchor specifications and a column for reads connecting them) and writes to a specified file. If filename is not specified, then a data.frame containing the information is returned. The value of the score parameter defines which field is used to populate the score field.

Usage

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export.chiasig(GIObject, fn = NULL, score = "counts")

## S4 method for signature 'GInteractions'
export.chiasig(GIObject, fn = NULL,
  score = "counts")

Arguments

GIObject

A GInteractions object.

fn

A filename to write the interactions data to

score

Which metadata column to use as the score: counts or normalised

Value

invisible(1) if outputting to file or a data.frame containing all of the corresponding information

Examples

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Bioconductor-mirror/GenomicInteractions documentation built on June 23, 2017, 6:23 p.m.