Man pages for Bioconductor-mirror/IPO
Automated Optimization of XCMS Data Processing parameters

attachListAttaching one list at the end of another
calcPPSCalculation of a peak picking score (PPS) by using natural,...
calculateXcmsSetCalculation of an xcmsSet-Object
combineParamsCombining two lists of parameters together.
createModelCreating a response surface model.
decodeEn-/decodes values to/from ranges of -1 to 1.
findIsotopes.CAMERAIdentification of Isotopes using the package CAMERA.
findIsotopes.IPOIdentification of 13C isotopes
getBbdParameterCreates a Box-Behnken Design of experiment
getCcdParameterCreates a Central-Composite Design of experiment
getDefaultRetCorCenterSampleGets the index of the sample with most peaks in it.
getDefaultRetGroupStartingParamsGives a List of parameters for xcms-methods retcor.obiwarp or...
getDefaultXcmsSetStartingParamsCreates a List of parameters for xcms-methods...
getNormalizedResponseIt combines Retention time Correction Scores (RCS) and...
getRGTVValuesCalculation of values used for a Retention time correction...
IPO-packageAutomated Optimization of Untargeted Metabolomics LC-MS Data...
optimizeRetGroupOptimization for parameters for retention time correction and...
optimizeXcmsSetOptimisation of peak picking parameters by using natural,...
toMatrixConverts an array into a matrix
typeCastParamsSplits parameters into those which should be optimized and...
writeParamsTableWrites XCMS settings to a file.
writeRScriptPrints an R-script to the screen which can be used for xcms...
Bioconductor-mirror/IPO documentation built on July 6, 2017, 5:02 a.m.