Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
|Author||Surajit Bhattacharya and Daniel Cox|
|Bioconductor views||GeneExpression GenePrediction GeneTarget Microarray Software StatisticalMethod|
|Maintainer||Surajit Bhattacharya <[email protected]>|
|Package repository||View on GitHub|
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