API for Bioconductor-mirror/IsoformSwitchAnalyzeR
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

Global functions
allPairwiseFeatures Source code
analyzeCPAT Man page Source code
analyzeIntronRetention Man page Source code
analyzeORF Man page Source code
analyzeORFforPTC Source code
analyzePFAM Man page Source code
analyzeSignalP Man page Source code
analyzeSwitchConsequences Man page Source code
compareAnnotationOfTwoIsoforms Source code
convertCoordinatsTranscriptToGenomic Source code
createSwitchAnalyzeRlist Man page Source code
cutGRanges Source code
determineTranscriptClass Source code
dim.switchAnalyzeRlist Source code
evalSig Source code
exampleSwitchList Man page
exampleSwitchListAnalyzed Man page
exampleSwitchListIntermediary Man page
expressionAnalysisPlot Source code
extractCalibrationStatus Man page Source code
extractConsequenceSummary Man page Source code
extractExpressionMatrix Man page Source code
extractGenomeWideAnalysis Man page Source code
extractSequence Man page Source code
extractSigData Source code
extractSwitchSummary Man page Source code
extractTopSwitches Man page Source code
head.switchAnalyzeRlist Source code
importCufflinksCummeRbund Man page Source code
importCufflinksFiles Man page Source code
importGTF Man page Source code
importIsoformExpression Man page Source code
importRdata Man page Source code
isoformSwitchAnalysisCombined Man page Source code
isoformSwitchAnalysisPart1 Man page Source code
isoformSwitchAnalysisPart2 Man page Source code
isoformSwitchTest Man page Source code
isoformSwitchTestDRIMSeq Man page Source code
jaccardDistance Source code
makeMinimumSwitchList Source code
medianQuartile Source code
myAllFindORFsinSeq Source code
myListToDf Source code
ncol.switchAnalyzeRlist Source code
nrow.switchAnalyzeRlist Source code
preFilter Man page Source code
prepareCuffExample Man page Source code
pvcApplySigma Source code
pvcEstimateSigma2 Source code
show.switchAnalyzeRlist Source code
startCapitalLetter Source code
subsetSwitchAnalyzeRlist Man page Source code
summary.switchAnalyzeRlist Source code
switchAnalyzeRlist Man page
switchAnalyzeRlist-class Man page
switchPlot Man page Source code
switchPlotGeneExp Man page Source code
switchPlotIsoExp Man page Source code
switchPlotIsoUsage Man page Source code
switchPlotTopSwitches Man page Source code
switchPlotTranscript Man page Source code
tail.switchAnalyzeRlist Source code
Bioconductor-mirror/IsoformSwitchAnalyzeR documentation built on June 10, 2017, 12:31 a.m.