Files in Bioconductor-mirror/LEA
LEA: an R package for Landscape and Ecological Association Studies

DESCRIPTION
NAMESPACE
NEWS
R/LFMM.R R/ancestrymap2geno.R R/ancestrymap2lfmm.R R/createDataSet.R R/crossEntropyEstimation.R R/geno2lfmm.R R/lfmm2geno.R R/lfmmClass.R R/lfmmProject.R R/pca.R R/pcaProject.R R/ped2geno.R R/ped2lfmm.R R/readEnv.R R/readGeno.R R/readLfmm.R R/readZscore.R R/sNMF.R R/snmfClass.R R/snmfProject.R R/test_character.R R/test_double.R R/test_extension.R R/test_input_file.R R/test_integer.R R/test_logical.R R/tools.R R/vcf2geno.R R/vcf2lfmm.R R/writeEnv.R R/writeGeno.R R/writeLfmm.R
data/datalist
data/example_ancestrymap.txt.gz
data/example_geno.tab.gz
data/example_lfmm.txt.gz
data/example_ped.txt.gz
data/example_vcf.txt.gz
data/tutorial.RData
inst/CITATION
man/G.Rd man/Q.Rd man/Replop-package.Rd man/adjusted_pvalues.Rd man/ancestrymap.Rd man/ancestrymap2geno.Rd man/ancestrymap2lfmm.Rd man/crossEntropy.Rd man/env.Rd man/geno.Rd man/geno2lfmm.Rd man/lfmm.Rd man/lfmm2geno.Rd man/main_LFMM.Rd man/main_createDataSet.Rd man/main_crossEntropyEstimation.Rd man/main_pca.Rd man/main_sNMF.Rd man/main_tracyWidom.Rd man/mlog10pvalues.Rd man/ped.Rd man/ped2geno.Rd man/ped2lfmm.Rd man/pvalues.Rd man/readEnv.Rd man/readGeno.Rd man/readLfmm.Rd man/readZscore.Rd man/tutorial.Rd man/vcf.Rd man/vcf2geno.Rd man/vcf2lfmm.Rd man/writeEnv.Rd man/writeGeno.Rd man/writeLFMM.Rd man/zscore.Rd man/zscores.Rd
src/LFMM/LFMM.c
src/LFMM/LFMM.h
src/LFMM/U.c
src/LFMM/U.h
src/LFMM/V.c
src/LFMM/V.h
src/LFMM/beta.c
src/LFMM/beta.h
src/LFMM/beta_k0.c
src/LFMM/beta_k0.h
src/LFMM/data_lfmm.c
src/LFMM/data_lfmm.h
src/LFMM/error_lfmm.c
src/LFMM/error_lfmm.h
src/LFMM/lfmm_algo.c
src/LFMM/lfmm_algo.h
src/LFMM/lfmm_k0.c
src/LFMM/lfmm_k0.h
src/LFMM/print_lfmm.c
src/LFMM/print_lfmm.h
src/LFMM/register_lfmm.c
src/LFMM/register_lfmm.h
src/LFMM/slice_lfmm.c
src/LFMM/slice_lfmm.h
src/LFMM/thread_lfmm.c
src/LFMM/thread_lfmm.h
src/LFMM/thread_var.c
src/LFMM/thread_var.h
src/Makevars
src/Makevars.win
src/R_LFMM.c
src/R_LFMM.h
src/R_ancestrymap2geno.c
src/R_ancestrymap2geno.h
src/R_ancestrymap2lfmm.c
src/R_ancestrymap2lfmm.h
src/R_createDataSet.c
src/R_createDataSet.h
src/R_crossEntropy.c
src/R_crossEntropy.h
src/R_geno2lfmm.c
src/R_geno2lfmm.h
src/R_init_LEA.c
src/R_lfmm2geno.c
src/R_lfmm2geno.h
src/R_pca.c
src/R_pca.h
src/R_ped2geno.c
src/R_ped2geno.h
src/R_ped2lfmm.c
src/R_ped2lfmm.h
src/R_sNMF.c
src/R_sNMF.h
src/R_tracyWidom.c
src/R_tracyWidom.h
src/R_vcf2geno.c
src/R_vcf2geno.h
src/bituint/bituint.c
src/bituint/bituint.h
src/bituint/calc_bituint.c
src/bituint/calc_bituint.h
src/bituint/io_geno_bituint.c
src/bituint/io_geno_bituint.h
src/bituint/slice_bituint.c
src/bituint/slice_bituint.h
src/bituint/thread_bituint.c
src/bituint/thread_bituint.h
src/convert/ancestrymap.c
src/convert/ancestrymap.h
src/convert/convert.h
src/convert/geno.c
src/convert/geno.h
src/convert/geno2lfmm.c
src/convert/geno2lfmm.h
src/convert/lfmm2geno.c
src/convert/lfmm2geno.h
src/convert/ped.c
src/convert/ped.h
src/convert/register_convert.c
src/convert/register_convert.h
src/convert/vcf2geno.c
src/convert/vcf2geno.h
src/createDataSet/createDataSet.c
src/createDataSet/createDataSet.h
src/createDataSet/error_cds.c
src/createDataSet/error_cds.h
src/createDataSet/print_cds.c
src/createDataSet/print_cds.h
src/createDataSet/register_cds.c
src/createDataSet/register_cds.h
src/crossEntropy/crossEntropy.c
src/crossEntropy/crossEntropy.h
src/crossEntropy/error_ce.c
src/crossEntropy/error_ce.h
src/crossEntropy/print_ce.c
src/crossEntropy/print_ce.h
src/crossEntropy/register_ce.c
src/crossEntropy/register_ce.h
src/io/io.h
src/io/io_data_double.c
src/io/io_data_double.h
src/io/io_data_float.c
src/io/io_data_float.h
src/io/io_data_int.c
src/io/io_data_int.h
src/io/io_error.c
src/io/io_error.h
src/io/io_tools.c
src/io/io_tools.h
src/io/print_bar.c
src/io/print_bar.h
src/io/read.h
src/matrix/cholesky.c
src/matrix/cholesky.h
src/matrix/data.c
src/matrix/data.h
src/matrix/diagonalize.c
src/matrix/diagonalize.h
src/matrix/error_matrix.c
src/matrix/error_matrix.h
src/matrix/inverse.c
src/matrix/inverse.h
src/matrix/matrix.c
src/matrix/matrix.h
src/matrix/normalize.c
src/matrix/normalize.h
src/matrix/rand.c
src/matrix/rand.h
src/matrix/random_projection.c
src/matrix/random_projection.h
src/matrix/slice_matrix.c
src/matrix/slice_matrix.h
src/matrix/sylvester.c
src/matrix/sylvester.h
src/matrix/thread_matrix.c
src/matrix/thread_matrix.h
src/nnlsm/blockpivot.c
src/nnlsm/blockpivot.h
src/nnlsm/nmf_bpas/AtB.txt
src/nnlsm/nmf_bpas/PassiveSet.txt
src/nnlsm/nmf_bpas/R.txt
src/nnlsm/nmf_bpas/README.txt
src/nnlsm/nmf_bpas/U.txt
src/nnlsm/nmf_bpas/W.pdf
src/nnlsm/nmf_bpas/W.txt
src/nnlsm/nmf_bpas/example_1.m
src/nnlsm/nmf_bpas/example_2.m
src/nnlsm/nmf_bpas/nmf.m
src/nnlsm/nmf_bpas/nnlsm_activeset.m
src/nnlsm/nmf_bpas/nnlsm_blockpivot.m
src/nnlsm/nmf_bpas/plop.txt
src/nnlsm/nmf_bpas/solveNormalEqComb.m
src/nnlsm/nnlsm.c
src/nnlsm/nnlsm.h
src/nnlsm/solvenormaleqcomb.c
src/nnlsm/solvenormaleqcomb.h
src/nnlsm/sort.c
src/nnlsm/sort.h
src/pca/calc_cov.c
src/pca/calc_cov.h
src/pca/error_pca.c
src/pca/error_pca.h
src/pca/pca.c
src/pca/pca.h
src/pca/print_pca.c
src/pca/print_pca.h
src/pca/register_pca.c
src/pca/register_pca.h
src/sNMF/als.c
src/sNMF/als.h
src/sNMF/als_F.c
src/sNMF/als_F.h
src/sNMF/als_Q.c
src/sNMF/als_Q.h
src/sNMF/als_k1.c
src/sNMF/als_k1.h
src/sNMF/criteria.c
src/sNMF/criteria.h
src/sNMF/error_snmf.c
src/sNMF/error_snmf.h
src/sNMF/print_snmf.c
src/sNMF/print_snmf.h
src/sNMF/register_snmf.c
src/sNMF/register_snmf.h
src/sNMF/sNMF.c
src/sNMF/sNMF.h
src/sNMF/thread_F.c
src/sNMF/thread_F.h
src/sNMF/thread_Q.c
src/sNMF/thread_Q.h
src/sNMF/thread_snmf.c
src/sNMF/thread_snmf.h
src/stats/beta_distribution.c
src/stats/beta_function.c
src/stats/entire_incomplete_gamma_function.c
src/stats/factorial.c
src/stats/gamma_density.c
src/stats/gamma_dist_tables.c
src/stats/gamma_distribution.c
src/stats/gamma_distribution.h
src/stats/gamma_function.c
src/stats/ln_beta_function.c
src/stats/ln_gamma_function.c
src/stats/stats.h
src/stats/student_t_distribution.c
src/stats/student_t_distribution.h
src/tracyWidom/error_tracyWidom.c
src/tracyWidom/error_tracyWidom.h
src/tracyWidom/print_tracyWidom.c
src/tracyWidom/print_tracyWidom.h
src/tracyWidom/register_tracyWidom.c
src/tracyWidom/register_tracyWidom.h
src/tracyWidom/tracyWidom.c
src/tracyWidom/tracyWidom.h
src/tracyWidom/twtable.h
vignettes/LEA.Rnw
vignettes/biblio.bib
vignettes/cse.bst
Bioconductor-mirror/LEA documentation built on June 7, 2017, 12:54 p.m.