API for Bioconductor-mirror/LowMACA
LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Global functions
BLOSUM62 Man page
ClustalChecks Source code
LowMACA Man page
LowMACA-class Man page
LowMACA-package Man page
LowMACA_AML Man page
MAD Source code
PerlModuleChecks Source code
Trident_Score Source code
alignSequences Man page
alignSequences,LowMACA-method Man page
allPfamAnalysis Man page Source code
alnWeights Source code
bpAll Man page
bpAll,LowMACA-method Man page
checkGene_to_geneID Source code
clustalMatrix Source code
clustalOAlign Source code
entropy Man page
entropy,LowMACA-method Man page
filterMAlign Source code
findPerl Source code
getGeneMutations Source code
getLocalGeneMutations Source code
getMutations Man page
getMutations,LowMACA-method Man page
lfm Man page
lfm,LowMACA-method Man page
lfmSingleSequence Man page
lfmSingleSequence,LowMACA-method Man page
lmAlignment Man page
lmAlignment,LowMACA-method Man page
lmEntropy Man page
lmEntropy,LowMACA-method Man page
lmMutations Man page
lmMutations,LowMACA-method Man page
lmObj Man page
lmParams Man page
lmParams,LowMACA-method Man page
lmParams<- Man page
lmParams<-,LowMACA-method Man page
lmPlot Man page
lmPlot,LowMACA-method Man page
lmPlotSingleSequence Man page
lmPlotSingleSequence,LowMACA-method Man page
makeNullProfile Source code
makeUniformModel Source code
mapMutations Man page
mapMutations,LowMACA-method Man page
myTrimmer Source code
newLowMACA Man page Source code
nullProfile Man page
nullProfile,LowMACA-method Man page
onLoad Source code
parallelize Man page
parallelize,LowMACA-method Man page
parallelize<- Man page
parallelize<-,LowMACA-method Man page
profileDensity Source code
profileEntropy Source code
protter Man page
protter,LowMACA-method Man page
sampleUnifEntropyL Source code
sampleUnifEntropyL.old Source code
scoreMatrix Source code
setup Man page
setup,LowMACA-method Man page
shannon Source code
show,LowMACA-method Man page
showTumorType Man page Source code
Bioconductor-mirror/LowMACA documentation built on Aug. 5, 2017, 4:35 a.m.