BLOSUM62: BLOSUM62 matrix

Description Usage Format Source Examples

Description

A substitution matrix used for sequence alignment of proteins. In LowMACA, it is used to calculate the trident conservation score.

Usage

1
data("BLOSUM62")

Format

A squared numeric matrix with aminoacids as rownames and colnames

Source

BLOSUM62 from NCBI

Examples

1
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3
#Load BLOSUM62 and show its structure
data(BLOSUM62)
str(BLOSUM62)

Bioconductor-mirror/LowMACA documentation built on Aug. 5, 2017, 4:35 a.m.