API for Bioconductor-mirror/MSGFplus
An interface between R and MS-GF+

Global functions
MSGFplus-package Man page
Sys.which2 Source code
[[,msgfParModificationList,numeric,missing-method Man page
[[<-,msgfParModificationList,numeric,missing,msgfParModification Man page
chargeRange Man page
chargeRange,msgfPar-method Man page
chargeRange<- Man page
chargeRange<-,msgfPar,msgfParChargeRange-method Man page
chargeRange<-,msgfPar,numeric-method Man page
createFileCall Source code
db Man page
db,msgfPar-method Man page
db<- Man page
db<-,msgfPar,character-method Man page
enzyme Man page
enzyme,msgfPar-method Man page
enzyme<- Man page
enzyme<-,msgfPar,character-method Man page
enzyme<-,msgfPar,msgfParEnzyme-method Man page
enzyme<-,msgfPar,numeric-method Man page
enzymeLookup Source code
finished Man page
finished,msgfAsync-method Man page
fragmentation Man page
fragmentation,msgfPar-method Man page
fragmentation<- Man page
fragmentation<-,msgfPar,character-method Man page
fragmentation<-,msgfPar,msgfParFragmentation-method Man page
fragmentation<-,msgfPar,numeric-method Man page
fragmentationLookup Source code
getMSGFpar Man page
getMSGFpar,msgfPar-method Man page
getMSGFpar,msgfParChargeRange-method Man page
getMSGFpar,msgfParEnzyme-method Man page
getMSGFpar,msgfParFragmentation-method Man page
getMSGFpar,msgfParInstrument-method Man page
getMSGFpar,msgfParIsotopeError-method Man page
getMSGFpar,msgfParLengthRange-method Man page
getMSGFpar,msgfParMatches-method Man page
getMSGFpar,msgfParModification-method Man page
getMSGFpar,msgfParModificationList-method Man page
getMSGFpar,msgfParNtt-method Man page
getMSGFpar,msgfParProtocol-method Man page
getMSGFpar,msgfParTda-method Man page
getMSGFpar,msgfParTolerance-method Man page
getMSGFplus Source code
import Man page
import,msgfAsync-method Man page
instrument Man page
instrument,msgfPar-method Man page
instrument<- Man page
instrument<-,msgfPar,character-method Man page
instrument<-,msgfPar,msgfParInstrument-method Man page
instrument<-,msgfPar,numeric-method Man page
instrumentLookup Source code
isotopeError Man page
isotopeError,msgfPar-method Man page
isotopeError<- Man page
isotopeError<-,msgfPar,msgfParIsotopeError-method Man page
isotopeError<-,msgfPar,numeric-method Man page
javaExecutable Source code
length,msgfPar-method Man page
length,msgfParChargeRange-method Man page
length,msgfParEnzyme-method Man page
length,msgfParFragmentation-method Man page
length,msgfParInstrument-method Man page
length,msgfParIsotopeError-method Man page
length,msgfParLengthRange-method Man page
length,msgfParMatches-method Man page
length,msgfParModificationList-method Man page
length,msgfParNtt-method Man page
length,msgfParProtocol-method Man page
length,msgfParTda-method Man page
length,msgfParTolerance-method Man page
lengthRange Man page
lengthRange,msgfPar-method Man page
lengthRange<- Man page
lengthRange<-,msgfPar,msgfParLengthRange-method Man page
lengthRange<-,msgfPar,numeric-method Man page
matches Man page
matches,msgfPar-method Man page
matches<- Man page
matches<-,msgfPar,msgfParMatches-method Man page
matches<-,msgfPar,numeric-method Man page
mods Man page
mods,msgfPar-method Man page
mods<- Man page
mods<-,msgfPar,msgfParModificationList-method Man page
msgfAsync-class Man page
msgfPar Man page Source code
msgfPar-class Man page
msgfParChargeRange Man page Source code
msgfParChargeRange-class Man page
msgfParEnzyme Man page Source code
msgfParEnzyme-class Man page
msgfParFragmentation Man page Source code
msgfParFragmentation-class Man page
msgfParFromID Man page Source code
msgfParGUI Man page Source code
msgfParInstrument Man page Source code
msgfParInstrument-class Man page
msgfParIsotopeError Man page Source code
msgfParIsotopeError-class Man page
msgfParLengthRange Man page Source code
msgfParLengthRange-class Man page
msgfParMatches Man page Source code
msgfParMatches-class Man page
msgfParModification Man page Source code
msgfParModification-class Man page
msgfParModificationList Man page Source code
msgfParModificationList-class Man page
msgfParNtt Man page Source code
msgfParNtt-class Man page
msgfParProtocol Man page Source code
msgfParProtocol-class Man page
msgfParTda Man page Source code
msgfParTda-class Man page
msgfParTolerance Man page Source code
msgfParTolerance-class Man page
nMod Man page
nMod,msgfPar-method Man page
nMod<- Man page
nMod<-,msgfPar,numeric-method Man page
ntt Man page
ntt,msgfPar-method Man page
ntt<- Man page
ntt<-,msgfPar,msgfParNtt-method Man page
ntt<-,msgfPar,numeric-method Man page
onLoad Source code
protocol Man page
protocol,msgfPar-method Man page
protocol<- Man page
protocol<-,msgfPar,character-method Man page
protocol<-,msgfPar,msgfParProtocol-method Man page
protocol<-,msgfPar,numeric-method Man page
protocolLookup Source code
runMSGF Man page
runMSGF,msgfPar-method Man page
running Man page
running,msgfAsync-method Man page
show,msgfPar-method Man page
show,msgfParChargeRange-method Man page
show,msgfParEnzyme-method Man page
show,msgfParFragmentation-method Man page
show,msgfParInstrument-method Man page
show,msgfParIsotopeError-method Man page
show,msgfParLengthRange-method Man page
show,msgfParMatches-method Man page
show,msgfParModification-method Man page
show,msgfParModificationList-method Man page
show,msgfParNtt-method Man page
show,msgfParProtocol-method Man page
show,msgfParTda-method Man page
show,msgfParTolerance-method Man page
tda Man page
tda,msgfPar-method Man page
tda<- Man page
tda<-,msgfPar,logical-method Man page
tda<-,msgfPar,msgfParTda-method Man page
tolerance Man page
tolerance,msgfPar-method Man page
tolerance<- Man page
tolerance<-,msgfPar,character-method Man page
tolerance<-,msgfPar,msgfParTolerance-method Man page
toleranceRange Man page
toleranceRange,msgfPar-method Man page
toleranceRange<- Man page
toleranceRange<-,msgfPar,numeric-method Man page
toleranceUnit Man page
toleranceUnit,msgfPar-method Man page
toleranceUnit<- Man page
toleranceUnit<-,msgfPar,character-method Man page
Bioconductor-mirror/MSGFplus documentation built on June 23, 2017, 3:16 p.m.