Bioconductor-mirror/MatrixRider: Obtain total affinity and occupancies for binding site matrices on a given sequence
Version 1.9.0

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

Getting started

Package details

AuthorElena Grassi
Bioconductor views GeneRegulation Genetics MotifAnnotation
MaintainerElena Grassi <[email protected]>
LicenseGPL-3
Version1.9.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/MatrixRider")
Bioconductor-mirror/MatrixRider documentation built on May 29, 2017, 8:27 a.m.