TBL2_MM_gen: The target genes table for mouse miRNAs

Description Usage Arguments Details References Examples

View source: R/TBL2_MM_gen.R

Description

This function generates target gene tables for human miRNAs base upon simple seed match toward 3' UTR of target genes

Usage

1
TBL2_MM_gen(SP="mmu",destdir="./")

Arguments

SP

Three characters string which describe mouse. Default is "mmu".

destdir

Directory where "id_conv" is saved. Default is "./".

Details

This function generates target gene tables for mouse miRNAs, used in the MiRaGE server described in Yoshizawa et al (2011). It saves data frame "TBL2" as the name of "TBL2_MM" in the destination directory.

References

Yoshizawa, M., Taguchi, Y-h., and Yasuda, J. (2011), Inference of Gene Regulation via miRNAs During ES Cell Differentiation Using MiRaGE Method. Int J Mol Sci 12(12):9265-9276

Examples

1
## Not run: TBL2_MM_gen()

Bioconductor-mirror/MiRaGE documentation built on May 29, 2017, 8:30 a.m.