A: Retrieve and set Source S and Mixing matrix A from IcaSet

Description Usage Arguments Value Author(s)

Description

These generic functions access and set the attributes S, SByGene and A stored in an object of class IcaSet.

Usage

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S(object)
S(object) <- value
SByGene(object)
SByGene(object) <- value
A(object)
A(object) <- value
nbComp(object)

Arguments

object

object of class IcaSet

value

Data.frame with rows representing: features (for S), genes (for SByGene), or samples (for A) and columns representing components.

Value

S returns a data.frame containing feature projection values; SByGene returns a data.frame containing gene projection values; A returns a data.frame containing sample contribution values. nbComp returns the number of components, i.e the number of columns of A.

Author(s)

Anne Biton


Bioconductor-mirror/MineICA documentation built on May 29, 2017, 8:30 a.m.