Files in Bioconductor-mirror/MinimumDistance
A Package for De Novo CNV Detection in Case-Parent Trios

.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/coercion-methods.R R/datasets.R R/defunct.R R/functions.R R/generator-funs.R R/help.R R/lattice-methods.R R/mad-methods.R R/methods-AnnotatedDataFrame.R R/methods-AssayData.R R/methods-FileViews.R R/methods-FilterParamMD.R R/methods-ILimit.R R/methods-MDRanges.R R/methods-MinDistExperiment.R R/methods-MinDistGRanges.R R/methods-MinDistParam.R R/methods-MinDistPosterior.R R/methods-ParentOffspring.R R/methods-ParentOffspringList.R R/methods-Pedigree.R R/methods-PennParam.R R/methods-ShallowSimpleList.R R/methods-SummarizedExperiment.R R/methods-TrioSet.R R/methods-TrioSetList.R R/methods-ff_array.R R/methods-grid.R R/methods-list.R R/methods-matrix.R R/segment2-methods.R R/utils.R R/zzz.R
data/md_exp.rda
data/md_gr.rda
data/trioSetListExample.rda
inst/NEWS.Rd
inst/extdata/F.txt
inst/extdata/M.txt
inst/extdata/O.txt
inst/extdata/O1.txt
inst/extdata/baf.rda
inst/extdata/exampleFiles.R
inst/extdata/logRratio.rda
inst/extdata/md_granges.rds
inst/extdata/mdgr.rds
inst/extdata/pedigreeInfo.rda
inst/extdata/pennCNV_MendelianProb.rda
inst/extdata/sample.sheet.rda
inst/extdata/trioSet12023chr12.rda
inst/scripts/Affy2.R
inst/scripts/Discordance.Rnw
inst/scripts/Sweave.sty
inst/scripts/affy.R
inst/scripts/cleft_notParallel.Rnw
inst/scripts/logR.baf.rda
inst/scripts/runDiscordance.R
inst/unitTests/.gitignore
inst/unitTests/Makefile
inst/unitTests/test_FilterParam.R inst/unitTests/test_MinDistExperiment.R inst/unitTests/test_Pedigree-class.R inst/unitTests/test_PedigreeViews.R inst/unitTests/test_SnpArrayExperiment.R inst/unitTests/test_TrioSetList.R inst/unitTests/test_calculateMindist.R inst/unitTests/test_callDenovoSegments.R inst/unitTests/test_few_markers.R inst/unitTests/test_posteriorCalls.R inst/unitTests/test_quads.R inst/unitTests/test_rdsViews.R inst/unitTests/test_splitsForCBS.R man/DNAcopyParam.Rd man/Defunct.Rd man/Deprecated.Rd man/FilterParamMD-class.Rd man/FilterParamMD.Rd man/MAP.Rd man/MAP2.Rd man/MDRanges-class.Rd man/MinDistExperiment-class.Rd man/MinDistExperiment.Rd man/MinDistGRanges-class.Rd man/MinDistGRanges.Rd man/MinDistParam-class.Rd man/MinDistParam.Rd man/MinDistPosterior-class.Rd man/MinimumDistance.Rd man/ParentOffspring-class.Rd man/ParentOffspringList-class.Rd man/Pedigree-class.Rd man/Pedigree.Rd man/PennParam.Rd man/TrioSet-class.Rd man/TrioSet.Rd man/TrioSetList-class.Rd man/TrioSetList.Rd man/TrioSetListLD.Rd man/acf2.Rd man/calculateMindist.Rd man/coercion-methods.Rd man/denovo.Rd man/exampleTrioSetList.Rd man/filterExperiment.Rd man/mad2.Rd man/mdLegend.Rd man/md_exp.Rd man/md_gr.Rd man/mindist.Rd man/nMAD.Rd man/pedigreeGrid.Rd man/pedigreeName.Rd man/pedigreeViewports.Rd man/plotDenovo.Rd man/range-ILimit-method.Rd man/segment2.Rd tests/doRUnit.R
vignettes/.gitignore
vignettes/MinimumDistance.Rnw
vignettes/MinimumDistance.bib
Bioconductor-mirror/MinimumDistance documentation built on July 1, 2017, 5:19 a.m.