Man pages for Bioconductor-mirror/MoonlightR
Identify oncogenes and tumor suppressor genes from omics data

dataFiltGene Expression (Rnaseqv2) data from TCGA LUAD
dataGRNGRN gene regulatory network output
dataURAOutput example from function Upstram Regulator Analysis
DEGsmatrixDEG Differentially expressed genes
DiseaseListInformation on 101 biological processes
DPADPA
EAGenesInformation about genes
FEAFEA
GDCprojectsInformation on GDC projects
geneInfoInformation about genes for normalization
GEO_TCGAtabInformation on GEO data (and overlap with TCGA)#' A data set...
getDataGEOgetDataGEO
getDataTCGAgetDataTCGA
GRNGenerate network
GSEAGSEA
knownDriverGenesInformation on known cancer driver gene from COSMIC
listMoonlightOutput list from Moonlight
LPALPA
moonlightmoonlight pipeline
MoonlightRMoonlightR
plotCircosplotCircos
plotFEAplotFEA
plotNetworkHiveplotNetworkHive: Hive network plot
plotURAplotURA: Upstream regulatory analysis heatmap plot
PRAPattern Recognition Analysis (PRA)
tabGrowBlockInformation growing/blocking characteristics for 101 selected...
URAURA Upstream Regulator Analysis
Bioconductor-mirror/MoonlightR documentation built on May 31, 2017, 8:39 p.m.