API for Bioconductor-mirror/MotIV
Motif Identification and Validation

Global functions
&,filters,filters-method Man page
FOXA Man page
FOXA1_rGADEM Man page
[,motiv,ANY,ANY-method Man page
[,motiv-method Man page
addLetter Source code
alignmentCorrection Source code
alignments-class Man page
as.data.frame Man page
as.data.frame,motiv-method Man page
as.data.frame-methods Man page
calculatePositionVector Source code
combineMotifs Man page
combineMotifs,motiv,filters-method Man page
combineMotifs,motiv,list-method Man page
combineMotifs-method Man page
combineMotiv Source code
cooccurences Man page Source code
countGap Source code
exportAsRangedData Man page Source code
exportAsTransfacFile Man page
exportAsTransfacFile,list-method Man page
exportAsTransfacFile,motiv-method Man page
exportAsTransfacFile-methods Man page
filter Man page
filter,motiv,filters-method Man page
filter,motiv,list-method Man page
filter-class Man page
filter-methods Man page
filterMotiv Source code
gadem Man page
generateDBScores Man page Source code
getGademPWM Man page Source code
getPWM Man page
getPWM,motiv-method Man page
getPWM-methods Man page
getSeqID Source code
jaspar Man page
jaspar.scores Man page
length,motiv-method Man page
letterA Source code
letterC Source code
letterG Source code
letterT Source code
makePWM Man page Source code
matches-class Man page
motifCutree Man page Source code
motifDistances Man page Source code
motifHclust Man page Source code
motifMatch Man page Source code
motiv Man page
motiv-class Man page
motivDistance Source code
names,filter-method Man page
names,filters-method Man page
names,motiv-method Man page
names<-,motiv-method Man page
occurences Man page Source code
onAttach Source code
plot Man page
plot,motiv,ANY-method Man page
plot,motiv,gadem-method Man page Man page
plot,motiv-method Man page
plot-methods Man page
plotDistance Source code
plotDistanceDensity Source code
plotDistanceHistogram Source code
plotDistanceVenn Source code
plotDistribution Source code
plotDistributionDensity Source code
plotDistributionHistogram Source code
plotMotif Source code
plotMotiv Source code
pwm2cons Source code
pwm2ic Source code
readDBScores Man page Source code
readGademPWMFile Man page Source code
readPWMfile Man page Source code
seqLogo2 Man page Source code
setFilter Man page Source code
show,filter-method Man page
show,motiv-method Man page
similarity Man page
similarity,list-method Man page
similarity,motiv-method Man page
split,motiv,filters-method Man page
split,motiv,list-method Man page
split-methods Man page
splitMotiv Source code
summary,filter-method Man page
summary,filters-method Man page
summary,list-method Man page
summary,motiv-method Man page
transcriptionFactor-class Man page
trimPWMedge Man page Source code
viewAlignments Man page Source code
viewMotifs Man page
viewMotifs,motiv-method Man page
viewMotifs-methods Man page
writeDBScores Man page Source code
x2ic Source code
|,filters,filters-method Man page
Bioconductor-mirror/MotIV documentation built on May 31, 2017, 8:40 p.m.