Files in Bioconductor-mirror/MotIV
Motif Identification and Validation

DESCRIPTION
NAMESPACE
R/AllClasses.R R/AllMethods.R R/DBScores.R R/calculatePosition.R R/exportAsRangedData.R R/exportAsTransfacFile.R R/filterMotiv.R R/getGademPWM.R R/motifDistances.R R/motifMatch.R R/motifOccurences.R R/plotDistance.R R/plotDistribution.R R/plotMotiv.R R/readGademPWMFile.R R/readPWMfile.R R/seqLogo2.R R/trimPWMedge.R R/viewAlignment.R R/zzz.R
configure
configure.ac
data/FOXA1_rGADEM.rda
data/jaspar2010.rda
data/jaspar2010_scores.rda
inst/extdata/example_motifs.txt
inst/extdata/jaspar2010.txt
inst/extdata/jaspar2010_PCC_SWU.scores
inst/extdata/observedPWMs.txt
man/FOXA_rGADEM.Rd man/aligns-class.Rd man/as.data.frame.Rd man/combineMotifs.Rd man/exportAsRangedData.Rd man/exportAsTransfacFile.Rd man/filter-class.Rd man/filter-methods.Rd man/filter.Rd man/generateDBScores.Rd man/getGademPWM.Rd man/getPWM.rd man/jaspar.Rd man/makePWM.Rd man/matches-class.Rd man/motifDistance.Rd man/motifMatch.Rd man/motifOccurences.Rd man/motiv-class.Rd man/motiv-methods.Rd man/plot.Rd man/readGademPWMFile.Rd man/readPWMfile.Rd man/seqLogo2.Rd man/setFilter.Rd man/split.Rd man/tf-class.Rd man/trimPWMedge.Rd man/viewAlignment.Rd man/viewMotifs.Rd
src/Alignment.cpp
src/Alignment.h
src/ColumnComp.cpp
src/ColumnComp.h
src/DeclareAll.cpp
src/Makevars
src/Makevars.in
src/Makevars.win
src/Motif.cpp
src/Motif.h
src/MotifDistances.cpp
src/MotifMatch.cpp
src/PSSM.h
src/PlatformSupport.cpp
src/PlatformSupport.h
src/RandPSSMGen.cpp
src/RandPSSMGen.h
src/generateScoresDB.cpp
src/globals.h
vignettes/MotIV.Rnw
Bioconductor-mirror/MotIV documentation built on May 31, 2017, 8:40 p.m.