Man pages for Bioconductor-mirror/MotIV
Motif Identification and Validation

aligns-classClass "alignments"
as.data.frameCoerce to a Data Frame
combineMotifsCombine Motifs
exportAsRangedDataExport MotIV Results
exportAsTransfacFileWrite Transfac Files
filterFilter Motifs
filter-classClass "filter"
filter-methodsFilters Methods
FOXA_rGADEMDataset for FOXA1
generateDBScoresDatabase Scores Functions
getGademPWMRecover PWM
getPWMGet PWMs from a motiv object
jasparJaspar 2010 Database
makePWMConstructing a pwm object
matches-classClass "matches"
motifDistanceClustering PWMs Computation
motifMatchMotifs Matches Analysis
motifOccurencesMotifs Occurences and Co-occurences
motiv-classClass "motiv"
motiv-methodsMotiv methods
plotPlot Motiv
readGademPWMFileRead Gadem File
readPWMfileRead Transfac File
seqLogo2Plot a sequence logo for a given position weight matrix
setFilterSet Motif Filter
splitSplit Motiv Object
tf-classTranscription Factor Class
trimPWMedgeTrim PWM edge
viewAlignmentPrint Motifs Alignments
viewMotifsPrint Identified Motifs
Bioconductor-mirror/MotIV documentation built on May 31, 2017, 8:40 p.m.