API for Bioconductor-mirror/OncoSimulR
Forward Genetic Simulation of Cancer Progression with Epistasis

Global functions
BNB_Algo5 Source code
LOD Man page Source code
LOD.internal Source code
LOD.oncosimul2 Man page Source code
LOD.oncosimulpop Man page Source code
Magellan_draw Source code
Magellan_stats Source code
OTtoPoset Source code
OncoSimulWide2Long Man page Source code
POM Man page Source code
POM.internal Source code
POM.oncosimul2 Man page Source code
POM.oncosimulpop Man page Source code
accessibleGenotypes Source code
addIntID.epist.order Source code
add_noise Source code
adjmat.to.restrictTable Source code
allFitnessEffects Man page Source code
allFitnessORMutatorEffects Source code
allGenotypes_to_matrix Source code
allMutatorEffects Man page Source code
allNamedGenes Source code
benchmark_1 Man page
benchmark_1_0.05 Man page
benchmark_2 Man page
benchmark_3 Man page
check.gm Source code
checkProperFullAdjMat Source code
checkProperMinimalAdjMat Source code
checkProperOTAdjMat Source code
checkRT Source code
closest_time Source code
connect Source code
connectIndiv Source code
convertRestrictTable Source code
countGenesFe Source code
create.drivers.by.time Source code
create_eq_ref Source code
detectionProbCheckParse Source code
diversityLOD Man page Source code
diversityPOM Man page Source code
epist.order.element Source code
epist.order.to.pairs.modules Source code
evalAllGenotypes Man page Source code
evalAllGenotypesFitAndMut Man page Source code
evalAllGenotypesMut Man page Source code
evalAllGenotypesORMut Source code
evalGenotype Man page Source code
evalGenotypeFitAndMut Man page Source code
evalGenotypeMut Man page Source code
evalGenotypeORMut Source code
evalRGenotype Source code
evalRGenotypeAndMut Source code
ex_missing_drivers_b11 Man page
ex_missing_drivers_b12 Man page
examplePosets Man page
examplesFitnessEffects Man page
faster_accessible_genotypes_R Source code
filter_inaccessible Source code
fitnessEffectsToIgraph Source code
from_genotype_fitness Source code
geneCounts Source code
geneModuleNull Source code
generateAllGenotypes Source code
generate_matrix_genotypes Source code
genot_fitness_to_epistasis Source code
genot_max Source code
genot_to_adj_mat Source code
genotypeLabel Source code
get.gene.counts Source code
get.mut.vector Source code
get.the.time.for.sample Source code
getGeneIDNum Source code
getNamesID Source code
gm.to.geneModuleL Source code
gtm2 Source code
is_null_na Source code
list.of.deps Source code
list_g_matches_fixed Source code
matchGeneIDs Source code
mcfLs Man page
myhsvcols Source code
mysplitb Source code
nice.vector.eo Source code
nr_BNB_Algo5 Source code
nr_oncoSimul.internal Source code
oe.to.df Source code
oncoSimul.internal Source code
oncoSimulIndiv Man page Source code
oncoSimulPop Man page Source code
oncoSimulSample Man page Source code
peak_valley Source code
phylogClone Source code
plot.evalAllGenotypes Man page
plot.evalAllGenotypesMut Man page
plot.fitnessEffects Man page Source code
plot.genotype_fitness_matrix Man page
plot.oncosimul Man page Source code
plot.oncosimulpop Man page Source code
plot.stacked2 Source code
plot.stream2 Source code
plotClonePhylog Man page Source code
plotClonesSt Source code
plotDrivers0 Source code
plotFitnessEffects Man page
plotFitnessLandscape Man page Source code
plotPoset Man page Source code
plotShannon Source code
poset Man page
poset.to.restrictTable Source code
posetToGraph Source code
print.oncosimul Man page Source code
print.oncosimulpop Man page Source code
print.sampledGenotypes Man page Source code
relabelLogaxis Source code
rfitness Man page Source code
samplePop Man page Source code
sampledGenotypes Man page Source code
shannonI Source code
simOGraph Man page Source code
summary.oncosimul Man page Source code
summary.oncosimulpop Man page Source code
thin.pop.data Source code
to.long.epist.order Source code
to.long.rt Source code
to.pairs.modules Source code
to_Fitness_Matrix Source code
to_Magellan Man page Source code
which_N_at_T Source code
wrap_accessibleGenotypes Source code
xlim.pop.data Source code
Bioconductor-mirror/OncoSimulR documentation built on May 31, 2017, 9:37 p.m.