Files in Bioconductor-mirror/OncoSimulR
Forward Genetic Simulation of Cancer Progression with Epistasis

DESCRIPTION
NAMESPACE
R/LOD_POM.R R/OncoSimulR.R R/RcppExports.R R/conversion-helpers.R R/fitness_landscape_utils.R R/from_genotype_utils.R R/generate-random-trees.R R/mutator.R R/new-restrict.R R/rfitness.R R/stacked-plots.R
data/benchmark_1.RData
data/benchmark_1_0.05.RData
data/benchmark_2.RData
data/benchmark_3.RData
data/ex_missing_drivers_b11.RData
data/ex_missing_drivers_b12.RData
data/examplePosets.RData
data/examplesFitnessEffects.RData
data/mcfLs.RData
inst/CITATION
inst/NEWS
inst/miscell/benchmark_1.R inst/miscell/benchmark_1_0.05.R inst/miscell/benchmark_2.R inst/miscell/benchmark_3.R
inst/miscell/example-binom-problems.cpp
inst/miscell/large_num_genes.R inst/miscell/large_num_genes_0.05.R inst/miscell/large_pop_size.R man/OncoSimulWide2Long.Rd man/POM.Rd man/allFitnessEffects.Rd man/benchmarks.Rd man/evalAllGenotypes.Rd man/example-missing-drivers.Rd man/examplePosets.Rd man/examplesFitnessEffects.Rd man/mcfLs.Rd man/oncoSimulIndiv.Rd man/plot.fitnessEffects.Rd man/plot.oncosimul.Rd man/plotClonePhylog.Rd man/plotFitnessLandscape.Rd man/plotPoset.Rd man/poset.Rd man/rfitness.Rd man/samplePop.Rd man/simOGraph.Rd man/to_Magellan.Rd
src/BNB_nr.cpp
src/BNB_v1.cpp
src/Makevars
src/Makevars.win
src/OncoSimulR_init.c
src/RcppExports.cpp
src/accessible_genotypes.cpp
src/bnb_common.cpp
src/bnb_common.h
src/common_classes.h
src/debug_common.h
src/new_restrict.cpp
src/new_restrict.h
src/new_restrict_former_print_utils.cpp
tests/README_names.txt
tests/manual/README.txt
tests/manual/test.Z-driverCounts-long.R tests/manual/test.Z-sample-only-last-long.R tests/manual/test.Z-warning-mutPropGrowth-long.R tests/manual/test.driverCounts-long.R tests/manual/test.exercise-plotting-code-long.R tests/manual/test.fitness-preds-long.R tests/manual/test.fixation-long.R tests/manual/test.mutPropGrowth-long.R tests/manual/test.mutator-long.R tests/manual/test.mutator-oncoSimulSample-long.R tests/manual/test.oncoSimulSample-limits-long.R tests/manual/test.per-gene-mutation-rates-long.R tests/manual/test.poset-transformations-long.R tests/manual/test.sample-prob-long.R tests/manual/test.simuls-run-examples-long.R tests/manual/test.warning-mutPropGrowth-long.R tests/testthat.R tests/testthat/test.LOD_POM.R tests/testthat/test.Z-all-fitness.R tests/testthat/test.Z-driverCounts.R tests/testthat/test.Z-mutator.R tests/testthat/test.Z-oncoSimulIndiv.R tests/testthat/test.Z-rfitness-landscape.R tests/testthat/test.Z-sample-only-last.R tests/testthat/test.Z-total-present-drivers.R tests/testthat/test.accessible_genotypes.R tests/testthat/test.all-fitness.R tests/testthat/test.driverCounts.R tests/testthat/test.epist-order-modules.R tests/testthat/test.exercise-plotting-code.R tests/testthat/test.exercise-rfitness.R tests/testthat/test.exercise-to-Magellan.R tests/testthat/test.fitness-preds.R tests/testthat/test.fixation.R tests/testthat/test.genotFitness.R tests/testthat/test.init-mutant.R tests/testthat/test.modules-root-no-root.R tests/testthat/test.mutPropGrowth.R tests/testthat/test.mutator-oncoSimulSample.R tests/testthat/test.mutator.R tests/testthat/test.oncoSimulIndiv-miscell.R tests/testthat/test.oncoSimulSample-failures.R tests/testthat/test.oncoSimulSample-limits.R tests/testthat/test.per-gene-mutation-rates.R tests/testthat/test.plotFitnessLandscape.R tests/testthat/test.poset-transformations.R tests/testthat/test.sample-prob.R tests/testthat/test.samplePop.R tests/testthat/test.simuls-run-examples.R tests/testthat/test.warning-mutPropGrowth.R tests/testthat/test.wide2long.R vignettes/OncoSimulR.Rmd
vignettes/OncoSimulR.bib
vignettes/custom4.css
vignettes/gitHeadInfo.gin
vignettes/gitinfo.sty
vignettes/gitsetinfo.sty
vignettes/preamble.tex
vignettes/relfunct.png
vignettes/relfunct.tex
Bioconductor-mirror/OncoSimulR documentation built on May 31, 2017, 9:37 p.m.