operaMate: Data process and analysis pipeline

Description Usage Arguments Value Examples

View source: R/dataprocess.R

Description

A systematical pipeline for opera data importing, normalization, quality control, hit detection, analysis, and visualization.

Usage

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operaMate(configFile, gDevice = "png", ...)

Arguments

configFile

the location of the file specifying all parameters

gDevice

the graphics device

...

addition arguments for graphics devices

Value

a list of three components: a list of cellData objects, the annotated table of each well, and the enrichment analysis table

Examples

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configFile <- file.path(system.file("Test", package = "OperaMate"),
"demoData", "demoParam.txt")
operaReport <- operaMate(configFile, gDevice = "png")
head(operaReport$report)

Bioconductor-mirror/OperaMate documentation built on May 31, 2017, 9:38 p.m.