|check.test.args||Helper Function to Compute Test Statistics|
|compareLists||Compare Ordered Lists with Weighted Overlap Score|
|getOverlap||Extracting the Intersecting IDs From a listComparison Object|
|OL.data||Gene Expression and Clinical Information of Two Cancer...|
|OL.result||Three Examples of Class 'OrderedList'|
|OrderedList||Detecting Similarities of Two Microarray Studies|
|overlap||Count Elements in Overlap between two Lists|
|plot.OrderedList||Plotting Function for OrderedList Objects|
|prepareData||Combining Two Studies into an Expression Set|
|preparePermutations||Prepare Permutation and Subsetting Matrices|
|print.OrderedList||Printing Function for OrderedList Objects|
|scoreOrderComparison||Score the Comparison of two Gene Rankings|
|scoreRankings||Score the Comparison of two Rankings|
|shuffledRandomScores||Generates Null-Distribution for List-Overlap-Scores|
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