API for Bioconductor-mirror/OrganismDbi
Software to enable the smooth interfacing of different database packages

Global functions
MultiDb Man page Source code
MultiDb-class Man page
OrganismDb Man page Source code
OrganismDb-class Man page
TxDb Man page
TxDb,OrganismDb-method Man page
TxDb<- Man page
TxDb<-,OrganismDb-method Man page
asBED,MultiDb-method Man page
asGFF,MultiDb-method Man page
available.GTFsForTxDbs Source code
bfs Source code
biocAnnPackages Source code
byToKeytype Source code
cantFindResourceMsg Source code
cds Source code
cds,MultiDb-method Man page
cdsBy Source code
cdsBy,MultiDb-method Man page
class:MultiDb Man page
class:OrganismDb Man page
cols Source code
colsByNodes Source code
columns,MultiDb-method Man page
combineMetadata Source code
compressMetadata Source code
dbconn Source code
dbconn,MultiDb-method Man page
dbfile Source code
dbfile,MultiDb-method Man page
disjointExons,MultiDb-method Man page
distance,GenomicRanges,MultiDb-method Man page
exons Source code
exons,MultiDb-method Man page
exonsBy Source code
exonsBy,MultiDb-method Man page
extractDbFiles Source code
extractPkgsAndCols Source code
extractTranscriptSeqs,BSgenome-method Man page
extractUpstreamSeqs,MultiDb-method Man page
fiveUTRsByTranscript,MultiDb-method Man page
genes Source code
genes,MultiDb-method Man page
gentlyExtractDbFiles Source code
getColsByNodes Source code
getDbNameFKeys Source code
getDbObjNames Source code
getDbObjs Source code
getForeignKeys Source code
getKeyRowWithOrgDbAndTxDb Source code
getMaxEns Source code
getMetaDataValue Source code
getOrgDbByClass Source code
getRelevantSubgraph Source code
getSelects Source code
getTxDb Source code
getTxDbByClass Source code
getTxDbIfAvailable Man page
getTxDbIfAvailable,MultiDb-method Man page
hasSynonymousKeys Source code
intronsByTranscript,MultiDb-method Man page
isActiveSeq,MultiDb-method Man page
isActiveSeq<-,MultiDb-method Man page
keys Source code
keys,MultiDb-method Man page
keytypes Source code
keytypes,MultiDb-method Man page
loadOrganismDbiPkg Source code
lookupDbFromKeytype Source code
lookupDbNameFromKeytype Source code
makeHubGTFIntoTxDb Source code
makeOrganismDbFromBiomart Man page Source code
makeOrganismDbFromTxDb Man page Source code
makeOrganismDbFromUCSC Man page Source code
makeOrganismPackage Man page Source code
makeOuterMcolFromInnerMcol Source code
makeReal Source code
makekeytypeMapping Source code
mapIds,MultiDb-method Man page
mapToTranscripts,ANY,MultiDb-method Man page
mergeSelectResults Source code
metadata,MultiDb-method Man page
microRNAs,MultiDb-method Man page
mkeys Source code
mungeGraphData Source code
packageTaxIds Source code
parseCol Source code
promoters,MultiDb-method Man page
resources Man page Source code
resources,MultiDb-method Man page
safelyGetTxDb Source code
select Source code
select,MultiDb-method Man page
selectByRanges Man page Source code
selectByRanges,MultiDb-method Man page
selectRangesById Man page Source code
selectRangesById,MultiDb-method Man page
seqinfo,MultiDb-method Man page
showGODb Source code
showGeneralSubObject Source code
showOrgDb Source code
showOrganismDbSpecificItems Source code
showTxDb Source code
tRNAs,MultiDb-method Man page
taxIdToOrgDb Source code
taxIdToOrgDbName Source code
taxonomyId Source code
taxonomyId,MultiDb-method Man page
test Source code
testGraphData Source code
testKeys Source code
threeUTRsByTranscript,MultiDb-method Man page
transcripts Source code
transcripts,MultiDb-method Man page
transcriptsBy Source code
transcriptsBy,MultiDb-method Man page
updateTxDb Source code
updateTxDbSeqMultiDb Source code
Bioconductor-mirror/OrganismDbi documentation built on May 31, 2017, 9:38 p.m.