Bioconductor-mirror/PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Version 1.19.0

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

Getting started

Package details

AuthorAdi Laurentiu Tarca <[email protected]>; Zhonghui Xu <[email protected]>
Bioconductor views Microarray OneChannel TwoChannel
MaintainerAdi Laurentiu Tarca <[email protected]>
LicenseGPL (>= 2)
Version1.19.0
URL
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/PADOG")
Bioconductor-mirror/PADOG documentation built on May 31, 2017, 9:39 p.m.