API for Bioconductor-mirror/PICS
Probabilistic inference of ChIP-seq

Global functions
FDR Man page
K Man page
K,pics-method Man page
K,picsError-method Man page
K,picsList-method Man page
PICS Man page Source code
[,picsList,ANY,ANY-method Man page
[,picsList-method Man page
[,segReadsList,ANY,ANY-method Man page
[,segReadsList-method Man page
[,segReadsListPE,ANY,ANY-method Man page
[,segReadsListPE-method Man page
[[,picsList,ANY,ANY-method Man page
[[,picsList-method Man page
[[,segReadsList,ANY,ANY-method Man page
[[,segReadsList-method Man page
[[,segReadsListPE,ANY,ANY-method Man page
\%in\%,ANY,segReads-method Man page
as.list,AlignedRead-method Man page
backgroundSim Source code
bam2gr Man page Source code Source code
cand_recursive Source code
candidate.region Man page Source code
chromosome Man page
chromosome,data.frame-method Man page
chromosome,pics-method Man page
chromosome,picsError-method Man page
chromosome,picsList-method Man page
code Man page
code,pics-method Man page
code,picsError-method Man page
code,picsList-method Man page
coerce Man page
coerce,AlignedRead,GenomeData-method Man page
coerce,RangedData,GenomeData-method Man page
coerce,data.frame,GRanges-method Man page
coerce,data.frame,GenomeData-method Man page
coerce,data.frame,picsList-method Man page Man page
coerce,picsList,RangedData-method Man page
coerce,picsList,data.frame-method Man page
delta Man page
delta,data.frame-method Man page
delta,pics-method Man page
delta,picsError-method Man page
delta,picsList-method Man page
density,picsList-method Man page
filterPICS Source code
filterPICS2 Source code
fitModelAllkSplit Source code
formatCInput Source code
length Man page
length,picsList-method Man page
length,segReadsList-method Man page
makeRangedDataOutput Man page Source code
map Man page
map,segReads-method Man page
map,segReadsList-method Man page
maxRange Man page
maxRange,pics-method Man page
maxRange,picsError-method Man page
maxRange,picsList-method Man page Man page
minRange Man page
minRange,pics-method Man page
minRange,picsError-method Man page
minRange,picsList-method Man page Man page
mu Man page
mu,data.frame-method Man page
mu,pics-method Man page
mu,picsError-method Man page
mu,picsList-method Man page
newPics Man page Source code
newPics,pics-method Man page
newPicsError Man page Source code
newPicsError,picsError-method Man page
newPicsList Man page Source code
newPicsList,picsList-method Man page
pics Man page
pics-class Man page
picsError Man page
picsError-class Man page
picsFDR Man page Source code
picsList Man page
picsList-class Man page
plot,pics,segReads-method Man page
plot,picsError,segReads-method Man page
plot,picsList,picsList-method Man page
plot,picsList,segReadsList-method Man page
s_cut Source code
score Man page
score,data.frame-method Man page
score,pics-method Man page
score,picsError-method Man page
score,picsList-method Man page
scoreForward Man page
scoreForward,data.frame-method Man page
scoreForward,pics-method Man page
scoreForward,picsError-method Man page
scoreForward,picsList-method Man page
scoreReverse Man page
scoreReverse,data.frame-method Man page
scoreReverse,pics-method Man page
scoreReverse,picsError-method Man page
scoreReverse,picsList-method Man page
se Man page
se,data.frame-method Man page
se,pics-method Man page
se,picsError-method Man page
se,picsList-method Man page
seF Man page
seF,data.frame-method Man page
seF,pics-method Man page
seF,picsError-method Man page
seF,picsList-method Man page
seR Man page
seR,data.frame-method Man page
seR,pics-method Man page
seR,picsError-method Man page
seR,picsList-method Man page
segChrRead Man page Source code
segReads Man page Source code
segReads-class Man page
segReadsGeneric Man page Source code
segReadsList Man page Source code
segReadsList-class Man page
segReadsListPE Man page Source code
segReadsListPE-class Man page
segReadsPE Man page Source code
segReadsPE-class Man page
segmentPICS Man page Source code
setParaEM Man page Source code
setParaPrior Man page Source code
show Man page
show,pics-method Man page
show,picsError-method Man page
show,picsList-method Man page
show,segReads-method Man page
show,segReadsList-method Man page
show-methods Man page
sigmaSqF Man page
sigmaSqF,data.frame-method Man page
sigmaSqF,pics-method Man page
sigmaSqF,picsError-method Man page
sigmaSqF,picsList-method Man page
sigmaSqR Man page
sigmaSqR,data.frame-method Man page
sigmaSqR,pics-method Man page
sigmaSqR,picsError-method Man page
sigmaSqR,picsList-method Man page
summary Man page
summary,pics-method Man page
summary,picsList-method Man page
summary,segReads-method Man page
summary,segReadsList-method Man page
summary-methods Man page
summarySeg Man page Source code
useRanges Source code
w Man page
w,data.frame-method Man page
w,pics-method Man page
w,picsError-method Man page
w,picsList-method Man page
wigDensity Man page
wigDensity,pics-method Man page
wigDensity,picsError-method Man page
wigDensity,picsList-method Man page
Bioconductor-mirror/PICS documentation built on May 31, 2017, 9:40 p.m.