Bioconductor-mirror/PWMEnrich: PWM enrichment analysis
Version 4.13.0

A toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.

Getting started

Package details

AuthorRobert Stojnic, Diego Diez
Bioconductor views MotifAnnotation SequenceMatching Software
MaintainerRobert Stojnic <[email protected]>
LicenseLGPL (>= 2)
Version4.13.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/PWMEnrich")
Bioconductor-mirror/PWMEnrich documentation built on May 31, 2017, 9:43 p.m.