Computes the homology scores based on the BLAST E-value. This function is used
predictPPI method to compute homology scores to decide whether
an interaction in a reference species is adopted to the target species
(see package vignette for a detailed description). It can be used to test
which E-values lead to which scores given a predefined E-value range.
One BLAST E-value or a numeric vector with different BLAST E-values
Numeric vector consisting of two values. The first value indicates the lower bound (smallest E-value). Each E-value which is equal or less than this bound is scored with 1. The second value indicates the upper bound (biggest E-value). Each E-value which is equal or greater than this bound is scored with 0.
Uses a linear function to map the E-value v to the range [l,u] where l is the lower and u the upper bound:
Numeric vector containing the scores.
Oliver Philipp [email protected]
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