Man pages for Bioconductor-mirror/PhenStat
Statistical analysis of phenotypic data

analysedDatasetMethod "analysedDataset"
analysedDatasetPhenListMethod "analysedDatasetPhenList"
analysedSubsetMethod "analysedSubset"
analysisResultsMethod "analysisResults"
batchInMethod "batchIn"
boxplotResidualBatchMethod "boxplotResidualBatch"
boxplotSexGenotypeMethod "boxplotSexGenotype"
boxplotSexGenotypeBatchMethod "boxplotSexGenotypeBatch"
boxplotSexGenotypeBatchAdjustedMethod "boxplotSexGenotypeBatchAdjusted"
boxplotSexGenotypeResultMethod "boxplotSexGenotypeResult"
boxplotSexGenotypeWeightBatchAdjustedMethod "boxplotSexGenotypeWeightBatchAdjusted"
categoricalBarplotMethod "categoricalBarplot"
checkDatasetMethod "checkDataset"
classificationTagMethod "classificationTag"
columnChecksMethod "columnChecks"
columnLevelsMethod "columnLevels"
comparisonMethod "comparison"
datasetMethod "dataset"
determiningLambdaMethod "determiningLambda"
dimMethod "dim"
finalLRModelMethod "finalLRModel"
finalModelMethod "finalModel"
finalTFModelMethod "finalTFModel"
FisherExactTestMethod "FisherExactTest"
formulaDeterminingLambdaMethod "formulaDeterminingLambda"
generateGraphsMethod "generateGraphs"
getColumnMethod "getColumn"
getColumnBatchAdjustedMethod "getColumnBatchAdjusted"
getColumnViewMethod "getColumnView"
getColumnWeightBatchAdjustedMethod "getColumnWeightBatchAdjusted"
getCountMatricesMethod "getCountMatrices"
getDatasetMethod "getDataset"
getGenotypeEffectMethod "getGenotypeEffect"
getMatrixMethod "getMatrix"
getPercentageMatrixMethod "getPercentageMatrix"
getStatMethod "getStat"
getVariableMethod "getVariable"
getVariablesMethod "getVariables"
hemiGenotypeMethod "hemiGenotype"
htest-classClass "htest"
htestPhenStat-classClass "htestPhenStat"
JSONOutputMethod "JSONOutput"
LargeDataObject-classClass "LargeDataObject"
LRDatasetMethod "LRDataset"
matrixCountMethod "matrixCount"
methodMethod "method"
methodTextMethod "methodText"
modelFormulaMethod "modelFormula"
modelFormulaLRMethod "modelFormulaLR"
multipleBatchesMethod "multipleBatches"
noSexesMethod "noSexes"
parametersMethod "parameters"
parserOutputSummaryMethod "parserOutputSummary"
parserOutputSummaryLRMethod "parserOutputSummaryLR"
parserOutputTFSummaryMethod "parserOutputTFSummary"
performReverseTransformationMethod "performReverseTransformation"
performTransformationMethod "performTransformation"
PhenListMethod "PhenList"
PhenList-classClass "PhenList"
PhenTestResultMethod "PhenTestResult"
PhenTestResult-classClass "PhenTestResult"
plotResidualPredictedMethod "plotResidualPredicted"
printLROutputMethod "printLROutput"
printTabStyleMethod "printTabStyle"
pvalueMethod "pvalue"
qqplotGenotypeMethod "qqplotGenotype"
qqplotRandomEffectsMethod "qqplotRandomEffects"
qqplotRotatedResidualsMethod "qqplotRotatedResiduals"
recommendMethodMethod "recommendMethod"
refGenotypeMethod "refGenotype"
RRTestMethod "RRTest"
scatterplotGenotypeWeightMethod "scatterplotGenotypeWeight"
scatterplotGenotypeWeightResultMethod "scatterplotGenotypeWeightResult"
scatterplotSexGenotypeBatchMethod "scatterplotSexGenotypeBatch"
scatterplotSexGenotypeBatchResultMethod "scatterplotSexGenotypeBatchResult"
setBatchMethod "setBatch"
setGenotypeMethod "setGenotype"
setMissingValueMethod "setMissingValue"
setSexMethod "setSex"
setWeightMethod "setWeight"
startLRModelMethod "startLRModel"
startModelMethod "startModel"
startTFModelMethod "startTFModel"
subsetTextMethod "subsetText"
summaryOutputMethod "summaryOutput"
testDatasetMethod "testDataset"
testFinalLRModelMethod "testFinalLRModel"
testFinalModelMethod "testFinalModel"
testGenotypeMethod "testGenotype"
TFDatasetMethod "TFDataset"
transformationMethod "transformation"
transformationJSONMethod "transformationJSON"
transformationTextMethod "transformationText"
vectorOutputMethod "vectorOutput"
vectorOutputMatricesMethod "vectorOutputMatrices"
weightInMethod "weightIn"
Bioconductor-mirror/PhenStat documentation built on May 31, 2017, 10:35 p.m.