Man pages for Bioconductor-mirror/RCAS
RNA Centric Annotation System

calculateCoverageProfilecalculateCoverageProfile
calculateCoverageProfileFromTxdbcalculateCoverageProfileFromTxdb
calculateCoverageProfileListcalculateCoverageProfileList
calculateCoverageProfileListFromTxdbcalculateCoverageProfileListFromTxdb
createControlRegionscreateControlRegions
createOrthologousGeneSetListcreateOrthologousMsigdbDataset
extractSequencesextractSequences
geneSetsRandom test gene sets
getFeatureBoundaryCoveragegetFeatureBoundaryCoverage
getFeatureBoundaryCoverageBingetFeatureBoundaryCoverageBin
getMotifSummaryTablegetMotifSummaryTable
getTargetedGenesTablegetTargetedGenesTable
getTxdbFeaturesgetTxdbFeatures
getTxdbFeaturesFromGRangesgetTxdbFeaturesFromGRanges
gffSample GFF file imported as a GRanges object
importBedimportBed
importGtfimportGtf
parseMsigdbparseMsigdb
plotFeatureBoundaryCoverageplotFeatureBoundaryCoverage
printMsigdbDatasetPrint MSIGDB Dataset to a file This function is used to print...
queryGffqueryGff
queryRegionsSample BED file imported as a GRanges object
retrieveOrthologsretrieveOrthologs
runGSEArunGSEA
runMotifRGrunMotifRG
runReportGenerate a RCAS Report for a list of transcriptome-level...
runTopGOrunTopGO
summarizeQueryRegionssummarizeQueryRegions
Bioconductor-mirror/RCAS documentation built on July 7, 2017, 10:59 p.m.