Man pages for Bioconductor-mirror/RCy3
Display and manipulate graphs in Cytoscape >= 3.3.0

addCyEdgeaddCyEdge
addCyNodeaddCyNode
addGraphToGraphaddGraphToGraph
clearSelectionclearSelection
copyVisualStylecopyVisualStyle
createWindowcreateWindow
createWindowFromSelectioncreateWindowFromSelection
cy2.edge.namescy2.edge.names
cyPlotcyPlot
CytoscapeConnectionCytoscapeConnection
CytoscapeConnectionClass-classClass "CytoscapeConnectionClass"
CytoscapeWindowCytoscapeWindow
CytoscapeWindowClass-classClass "CytoscapeWindowClass"
deleteAllWindowsdeleteAllWindows
deleteEdgeAttributedeleteEdgeAttribute
deleteNodeAttributedeleteNodeAttribute
deleteSelectedEdgesdeleteSelectedEdges
deleteSelectedNodesdeleteSelectedNodes
deleteWindowdeleteWindow
demoSimpleGraphdemoSimpleGraph
displayGraphdisplayGraph
dockPaneldockPanel
edaeda
eda.nameseda.names
existing.CytoscapeWindowexisting.CytoscapeWindow
fitContentfitContent
fitSelectedContentfitSelectedContent
floatPanelfloatPanel
getAdjacentEdgeNamesgetAdjacentEdgeNames
getAllEdgeAttributesgetAllEdgeAttributes
getAllEdgesgetAllEdges
getAllNodeAttributesgetAllNodeAttributes
getAllNodesgetAllNodes
getArrowShapesgetArrowShapes
getAttributeClassNamesgetAttributeClassNames
getCentergetCenter
getDefaultBackgroundColorgetDefaultBackgroundColor
getDefaultEdgeReverseSelectionColorgetDefaultEdgeReverseSelectionColor
getDefaultEdgeSelectionColorgetDefaultEdgeSelectionColor
getDefaultNodeReverseSelectionColorgetDefaultNodeReverseSelectionColor
getDefaultNodeSelectionColorgetDefaultNodeSelectionColor
getDirectlyModifiableVisualPropertiesgetDirectlyModifiableVisualProperties
getEdgeAttributegetEdgeAttribute
getEdgeAttributeNamesgetEdgeAttributeNames
getEdgeCountgetEdgeCount
getFirstNeighborsgetFirstNeighbors
getGraphgetGraph
getGraphFromCyWindowgetGraphFromCyWindow
getLayoutNameMappinggetLayoutNameMapping
getLayoutNamesgetLayoutNames
getLayoutPropertyNamesgetLayoutPropertyNames
getLayoutPropertyTypegetLayoutPropertyType
getLayoutPropertyValuegetLayoutPropertyValue
getLineStylesgetLineStyles
getNodeAttributegetNodeAttribute
getNodeAttributeNamesgetNodeAttributeNames
getNodeCountgetNodeCount
getNodePositiongetNodePosition
getNodeShapesgetNodeShapes
getNodeSizegetNodeSize
getSelectedEdgeCountgetSelectedEdgeCount
getSelectedEdgesgetSelectedEdges
getSelectedNodeCountgetSelectedNodeCount
getSelectedNodesgetSelectedNodes
getViewCoordinatesgetViewCoordinates
getVisualStyleNamesgetVisualStyleNames
getWindowCountgetWindowCount
getWindowIDgetWindowID
getWindowListgetWindowList
getZoomgetZoom
hideAllPanelshideAllPanels
hideNodeshideNodes
hidePanelhidePanel
hideSelectedEdgeshideSelectedEdges
hideSelectedNodeshideSelectedNodes
initEdgeAttributeinitEdgeAttribute
initNodeAttributeinitNodeAttribute
invertEdgeSelectioninvertEdgeSelection
invertNodeSelectioninvertNodeSelection
layoutNetworklayoutNetwork
lockNodeDimensionslockNodeDimensions
makeRandomGraphmakeRandomGraph
makeSimpleGraphmakeSimpleGraph
noanoa
noa.namesnoa.names
pingping
pluginVersionpluginVersion
predictTimeToDisplayGraphpredictTimeToDisplayGraph
raiseWindowraiseWindow
redrawredraw
restoreLayoutrestoreLayout
saveImagesaveImage
saveLayoutsaveLayout
saveNetworksaveNetwork
selectEdgesselectEdges
selectFirstNeighborsOfSelectedNodesselectFirstNeighborsOfSelectedNodes
selectNodesselectNodes
sendEdgessendEdges
sendNodessendNodes
setCentersetCenter
setDefaultBackgroundColorsetDefaultBackgroundColor
setDefaultEdgeColorsetDefaultEdgeColor
setDefaultEdgeFontSizesetDefaultEdgeFontSize
setDefaultEdgeLineWidthsetDefaultEdgeLineWidth
setDefaultEdgeReverseSelectionColorsetDefaultEdgeReverseSelectionColor
setDefaultEdgeSelectionColorsetDefaultEdgeSelectionColor
setDefaultEdgeSourceArrowColorsetDefaultEdgeSourceArrowColor
setDefaultEdgeTargetArrowColorsetDefaultEdgeTargetArrowColor
setDefaultNodeBorderColorsetDefaultNodeBorderColor
setDefaultNodeBorderWidthsetDefaultNodeBorderWidth
setDefaultNodeColorsetDefaultNodeColor
setDefaultNodeFontSizesetDefaultNodeFontSize
setDefaultNodeLabelColorsetDefaultNodeLabelColor
setDefaultNodeReverseSelectionColorsetDefaultNodeReverseSelectionColor
setDefaultNodeSelectionColorsetDefaultNodeSelectionColor
setDefaultNodeShapesetDefaultNodeShape
setDefaultNodeSizesetDefaultNodeSize
setEdgeAttributessetEdgeAttributes
setEdgeAttributesDirectsetEdgeAttributesDirect
setEdgeColorDirectsetEdgeColorDirect
setEdgeColorRulesetEdgeColorRule
setEdgeFontSizeDirectsetEdgeFontSizeDirect
setEdgeLabelColorDirectsetEdgeLabelColorDirect
setEdgeLabelDirectsetEdgeLabelDirect
setEdgeLabelOpacityDirectsetEdgeLabelOpacityDirect
setEdgeLabelRulesetEdgeLabelRule
setEdgeLineStyleDirectsetEdgeLineStyleDirect
setEdgeLineStyleRulespecify the line styles to be used in drawing edges
setEdgeLineWidthDirectsetEdgeLineWidthDirect
setEdgeLineWidthRulesetEdgeLineWidthRule
setEdgeOpacityDirectsetEdgeOpacityDirect
setEdgeOpacityRulesetEdgeOpacityRule
setEdgeSourceArrowColorDirectsetEdgeSourceArrowColorDirect
setEdgeSourceArrowColorRuleSpecify Rule for the Source Arrow Color
setEdgeSourceArrowOpacityDirectsetEdgeSourceArrowOpacityDirect
setEdgeSourceArrowRulespecify the arrow types to be used at the end of an edge at...
setEdgeSourceArrowShapeDirectsetEdgeSourceArrowShapeDirect
setEdgeTargetArrowColorDirectsetEdgeTargetArrowColorDirect
setEdgeTargetArrowColorRuleSpecify rule for the target arrow color
setEdgeTargetArrowOpacityDirectsetEdgeTargetArrowOpacityDirect
setEdgeTargetArrowRulespecify the arrow types to be used at the end of an edge, at...
setEdgeTargetArrowShapeDirectsetEdgeTargetArrowShapeDirect
setEdgeTooltipDirectsetEdgeTooltipDirect
setEdgeTooltipRulesetEdgeTooltipRule
setGraphsetGraph
setLayoutPropertiessetLayoutProperties
setNodeAttributessetNodeAttributes
setNodeAttributesDirectsetNodeAttributesDirect
setNodeBorderColorDirectsetNodeBorderColorDirect
setNodeBorderColorRulesetNodeBorderColorRule
setNodeBorderOpacityDirectsetNodeBorderOpacityDirect
setNodeBorderWidthDirectsetNodeBorderWidthDirect
setNodeBorderWidthRulesetNodeBorderWidthRule
setNodeColorDirectsetNodeColorDirect
setNodeColorRulesetNodeColorRule
setNodeFillOpacityDirectsetNodeFillOpacityDirect
setNodeFontSizeDirectsetNodeFontSizeDirect
setNodeHeightDirectsetNodeHeightDirect
setNodeImageDirectsetNodeImageDirect
setNodeLabelColorDirectsetNodeLabelColorDirect
setNodeLabelDirectsetNodeLabelDirect
setNodeLabelOpacityDirectsetNodeLabelOpacityDirect
setNodeLabelRulesetNodeLabelRule
setNodeOpacityDirectsetNodeOpacityDirect
setNodeOpacityRulesetNodeOpacityRule
setNodePositionsetNodePosition
setNodeShapeDirectsetNodeShapeDirect
setNodeShapeRulesetNodeShapeRule
setNodeSizeDirectsetNodeSizeDirect
setNodeSizeRulesetNodeSizeRule
setNodeTooltipRulesetNodeTooltipRule
setNodeWidthDirectsetNodeWidthDirect
setTooltipDismissDelaysetTooltipDismissDelay
setTooltipInitialDelaysetTooltipInitialDelay
setVisualStylesetVisualStyle
setWindowSizesetWindowSize
setZoomsetZoom
showGraphicsDetailsshowGraphicsDetails
unhideAllunhideAll
Bioconductor-mirror/RCy3 documentation built on May 31, 2017, 10:41 p.m.