Files in Bioconductor-mirror/RIPSeeker
RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments

DESCRIPTION
NAMESPACE
R/addDummyProb.R R/addPseudoAlignment.R R/annotateRIP.R R/binCount.R R/combineAlignGals.R R/combineRIP.R R/computeLogOdd.R R/computeRPKM.R R/disambiguateMultihits.R R/empiricalFDR.R R/evalBinSize.R R/exportGRanges.R R/galp2gal.R R/getAlignGal.R R/logScoreWithControl.R R/logScoreWithoutControl.R R/mainSeek.R R/mainSeekSingleChrom.R R/nbh.GRanges.R R/nbh.R R/nbh.integer.R R/nbh_chk.R R/nbh_em.R R/nbh_gen.R R/nbh_init.R R/nbh_vit.R R/nbm_chk.R R/nbm_em.R R/plotCoverage.R R/randindx.R R/ripSeek.R R/rulebaseRIPSeek.R R/scoreMergedBins.R R/seekRIP.R R/selectBinSize.R R/statdis.R R/viewRIP.R
inst/CITATION
inst/NEWS
inst/extdata/PRC2/SRR039210_processed_tophat/accepted_hits_noDup_sel_chrX.bam
inst/extdata/PRC2/SRR039211_processed_tophat/accepted_hits_noDup_sel_chrX.bam
inst/extdata/PRC2/SRR039214_processed_tophat/accepted_hits_noDup_sel_chrX.bam
inst/extdata/RIPregions/RIPregion_biorep1.gff3
inst/extdata/RIPregions/RIPregion_biorep2.gff3
inst/extdata/pairedend/ex1.bam
man/RIPSeeker-package.Rd man/addDummyProb.Rd man/addPseudoAlignment.Rd man/annotateRIP.Rd man/binCount.Rd man/combineAlignGals.Rd man/combineRIP.Rd man/computeLogOdd.Rd man/computeRPKM.Rd man/disambiguateMultihits.Rd man/empiricalFDR.Rd man/evalBinSize.Rd man/exportGRanges.Rd man/galp2gal.Rd man/getAlignGal.Rd man/logScoreWithControl.Rd man/logScoreWithoutControl.Rd man/mainSeek.Rd man/mainSeekSingleChrom.Rd man/nbh.GRanges.Rd man/nbh.Rd man/nbh.integer.Rd man/nbh_chk.Rd man/nbh_em.Rd man/nbh_gen.Rd man/nbh_init.Rd man/nbh_vit.Rd man/nbm_chk.Rd man/nbm_em.Rd man/plotCoverage.Rd man/plotStrandedCoverage.Rd man/randindx.Rd man/ripSeek.Rd man/rulebaseRIPSeek.Rd man/scoreMergedBins.Rd man/seekRIP.Rd man/selectBinSize.Rd man/statdis.Rd man/viewRIP.Rd
vignettes/RIPSeeker.Rnw
vignettes/RIPSeeker.bib
Bioconductor-mirror/RIPSeeker documentation built on May 31, 2017, 11:34 p.m.