API for Bioconductor-mirror/RNAither
Statistical analysis of high-throughput RNAi screens

Global functions
BScore Man page Source code
DRQualControl Man page Source code
GOannotate Source code
LiWongRank Man page Source code
MannWhitney Man page Source code
PlotSpatialDistrib Source code
RNAither Man page
RNAither-package Man page
RankProduct Man page Source code
SNRQualControl Man page Source code
Ttest Man page Source code
ZPRIMEQualControl Man page Source code
ZPrime Source code
ZScore Man page Source code
ZScorePerScreen Man page Source code
ZScorePlot Man page Source code
ZScorePlotTwo Man page Source code
attempt_fix Source code
channelPlot Man page Source code
check_layout_consistent Source code
closestToZero Man page Source code
compareHits Man page Source code
compareReplicaPlates Man page Source code
compareReplicateSD Man page Source code
compareReplicateSDPerScreen Man page Source code
compareReplicates Man page Source code
controlDensity Man page Source code
controlDensityPerPlate Man page Source code
controlDensityPerScreen Man page Source code
controlNorm Man page Source code
createReplicateMatrix Source code
createSubset Man page Source code
dataset Man page
datasetDrosophila Man page
discardLabtek Man page Source code
discardWells Man page Source code
divNorm Man page Source code
divideChannels Man page Source code
doCtrlNorm Source code
doPercNegNorm Source code
doPocNorm Source code
dynamicRange Source code
eraseDataSetColumn Man page Source code
findReplicates Man page Source code
function1 Source code
function2 Source code
function2b Source code
function2c Source code
function3 Source code
function4a Source code
function4b Source code
function5 Source code
function6 Source code
function7 Source code
furthestFromZero Man page Source code
geneNameAnno Source code
generateDatasetFile Man page Source code
generateRepMatNoFilter Man page Source code
generateReplicateMat Man page Source code
gseaAnalysis Man page Source code
gseaAnalysisPt1 Source code
gseaAnalysisPt2 Source code
gseaTableFunc Source code
header Man page
headerDrosophila Man page
hitselectionPval Man page Source code
hitselectionZscore Man page Source code
hitselectionZscorePval Man page Source code
incorporatepValVec Man page Source code
indexSubset Man page Source code
joinDatasetFiles Man page Source code
joinDatasets Man page Source code
listChooseIndex Source code
lowessNorm Man page Source code
mainAnalysis Man page Source code
makeBoxplot4PlateType Man page Source code
makeBoxplotControls Man page Source code
makeBoxplotControlsPerPlate Man page Source code
makeBoxplotControlsPerScreen Man page Source code
makeBoxplotOverview Source code
makeBoxplotPerPlate Man page Source code
makeBoxplotPerScreen Man page Source code
makeCorrPlots Source code
makeCtrlBoxPlot Source code
makeCtrlDensityPlot Source code
makePlateDetailPlots Source code
makeQCPlots Source code
makeScreenOverview Source code
makefullbarplot Source code
makevolcanoplot Source code
multTestAdjust Man page Source code
numCellQualControl Man page Source code
orderGeneIDs Man page Source code
pValVec1 Man page
pValVec2 Man page
percCellQualControl Man page Source code
plotBar Man page Source code
plotBarGeruest Source code
plotControlHisto Man page Source code
plotControlHistoPerplate Man page Source code
plotControlHistoPerscreen Man page Source code
plotHisto Man page Source code
plotHistoPerplate Man page Source code
plotHistoPerscreen Man page Source code
plotQQ Man page Source code
plotQQperplate Man page Source code
plotQQperscreen Man page Source code
plothist Source code
plotmybar Source code
plotqq Source code
plotscatter Source code
quantileNormalization Man page Source code
reorderdata Source code
replicatesCV Man page Source code
replicatesSpearmancor Man page Source code
rms Man page Source code
rnaither Man page Source code
saveDataset Man page Source code
saveOldIntensityColumns Man page Source code
savepValVec Man page Source code
scoredDataset1 Man page
scoredDataset2 Man page
spatialDistrib Man page Source code
spatialDistribHits Man page Source code
subtractBackground Man page Source code
sumChannels Man page Source code
summarizeReplicates Source code
summarizeReps Man page Source code
summarizeRepsNoFiltering Man page Source code
trim Man page Source code
varAdjust Man page Source code
vennDiag Man page Source code
vennDiagfunc Source code
volcanoPlot Man page Source code
whtml Source code
writeSummaryHtml Source code
writegoresults Source code
writehitlist Source code
ylabCompute Source code
Bioconductor-mirror/RNAither documentation built on May 31, 2017, 11:36 p.m.