An R package for analysis of massive parallel sequencing based RNA structure probing data

Global functions | |
---|---|

BED2txDb | Man page Source code |

Fu | Source code |

GR2norm_df | Man page Source code |

HRF_EUC | Source code |

RNA_dc | Source code |

absolute_difference | Source code |

add_sequence | Source code |

align_smoothing_matrix | Source code |

all_dc | Source code |

bam2bedgraph | Man page Source code |

bedgraph2norm | Man page Source code |

comp | Man page Source code |

compare_prop | Source code |

compare_prop_slograt | Source code |

compdata | Man page Source code |

compress_bedgraph | Source code |

compress_one_chromosome | Source code |

construct_smoothing_matrix | Source code |

correct_merged | Source code |

correct_oversaturation | Man page Source code |

count_nt | Source code |

dtcr | Man page Source code |

k2n_calc | Man page Source code |

moving_average | Source code |

no_dc | Source code |

norm2bedgraph | Man page Source code |

norm_df2GR | Man page Source code |

offset_oneRNA | Source code |

plotRNA | Man page Source code |

plotReads | Man page Source code |

process_oneRNA_compmerg | Source code |

process_oneRNA_compmerg_slograt | Source code |

process_oneRNA_compmerg_slograt_pvalues | Source code |

process_oneRNA_euc | Source code |

rank_fun | Source code |

readsamples | Man page Source code |

remove_unannotated | Source code |

save_bedgraph | Source code |

slograt | Man page Source code |

swinsor | Man page Source code |

swinsor_oneRNA | Source code |

swinsor_vector | Man page Source code |

ubar | Source code |

winsor | Man page Source code |

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