Man pages for Bioconductor-mirror/ROntoTools
R Onto-Tools suite

alpha1MRCompute alpha weights
alphaMLGCompute alpha weights
compute.fisherCombine independent p-values using the Fisher method
compute.normalInvCombine independent p-values using the normal inversion...
KEGGpathway2GraphModified version of the same function from KEGGgraph
keggPathwayGraphsDownload and parse KEGG pathway data
keggPathwayNamesObtain KEGG pathway titles
nodeWeightsRetrieve the node weights of a graph
pDisPrimary dis-regulation: Pathway analysis approach based on...
pDisPathway-classClass that encodes the result of pDis analysis for a single...
pDisRes-classPrimary dis-regulation (pDis) result class
pePathway-Express: Pathway analysis of signaling pathways
peEdgeRenderInfoExtract edge render information from a 'pePathway-class'...
peNodeRenderInfoExtract node render information from a 'pePathway-class'...
pePathway-classClass that encodes the result of Pathway-Express for a single...
peRes-classPathway-Express result class
plot.pePathway-methodsPlot pathway level statistics
plot.peRes-methodsPlot Pathway-Express result
setEdgeWeightsSet gene weights based on edge type
setNodeWeightsSet node weights
subGraphByNodeTypeModified version of the same function from KEGGgraph
summary.pDisResSummarize the results of a primary dis-regulation (pDis)...
Summary-pDisRes-methodSummarize the results of a Pathway-Express analysis
summary.peResSummarize the results of a Pathway-Express analysis
Summary-peRes-methodSummarize the results of a Pathway-Express analysis
Bioconductor-mirror/ROntoTools documentation built on May 31, 2017, 11:37 p.m.