|adjM2gml||Create GML file from readAmigoDot output.|
|AmigoDot||AmigoDot constructor and accessors|
|AmigoDot.to.Cyto||Opening the AmigoDot graph in Cytoscape through RCytoscape.|
|AmigoDot.to.graphAM||Converts an AmigoDot S4 object to a graphAM object.|
|AmigoDot.to.graphNEL||Converts an AmigoDot S4 object to a graphNEL object.|
|c5.go.mapping||MSigDB C5 GO term to GO ID mapping|
|exportCytoGML||Writes out an igraph graph to a Cytoscape readable GML file.|
|getAmigoTree||Getting the DAG GO tree for a set of GO ID's.|
|RamiGO-package||AmiGO visualize R interface|
|readAmigoDot||Parser for the GraphViz DOT format.|
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