API for Bioconductor-mirror/Rariant
Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies

Global functions
Rariant Man page
Rariant-package Man page
acCi Man page Source code
acCi4 Source code
baseFillScale Man page Source code
binGRanges Source code
binomTestPval Source code
blogit Source code
callConsensus Man page Source code
call_base Source code
checkCalls Source code
ciAdjustLevel Man page Source code
ciCovers Man page Source code
ciOutside Man page Source code
ciOverlap Man page Source code
ciWidth Man page Source code
classifyEvent Source code
combineCalls Source code
comparativeMismatch Source code
coverageProbability Man page Source code
df2gr Source code
dna_bases Source code
ds2int Source code
eventFillScale Man page Source code
evidenceHeatmap Man page Source code
exampleCalls Source code
feTest Man page Source code
filterCalls Man page Source code
findCalls Man page Source code
gr2df Source code
gr2pos Man page Source code
gr2vr Source code
grDensity Source code
ind2base Source code
mat2ind Source code
mergeCalls Man page Source code
mismatchCount Man page Source code
mismatchUtils Man page
nhsCi Man page Source code
nmTest Man page Source code
nmTestOld Source code
plotAbundanceShift Man page Source code
plotCIs Man page
plotConfidenceIntervals Man page Source code
plotRates Source code
plotShiftSupport Source code
pos2gr Man page Source code
propCIs Man page
propTests Man page
rariant Man page
rariant,BamFile,BamFile,GRanges-method Man page
rariant,array,array,GRanges-method Man page
rariant,character,character,GRanges-method Man page
rariant-methods Man page
rariantFromBam Source code
rariantFromMatrix Source code
rariantInspect Man page Source code
rariantStandalone Man page Source code
rateFillScale Man page Source code
rdSimulate Source code
readRariant Man page Source code
reevalSites Source code
scoreTest Man page Source code
selectStrand Man page Source code
seqDepth Man page Source code
splitSample Man page
splitSampleBinom Man page Source code
str_capture_matrix Source code
tallyBamRegion Man page Source code
tallyPlot Man page Source code
updateCalls Man page Source code
verdictColorScale Man page Source code
vr2gr Source code
wilsonScore Source code
writeRariant Man page Source code
yesNoMaybe Man page Source code
Bioconductor-mirror/Rariant documentation built on May 31, 2017, 11:41 p.m.