Files in Bioconductor-mirror/Rbowtie
R bowtie wrapper

.BBSoptions
DESCRIPTION
LICENSE
NAMESPACE
R/Rbowtie.R R/SpliceMap.R
inst/CITATION
inst/NEWS
inst/samples/reads/reads.fastq
inst/samples/refs/chr1.fa
inst/samples/refs/chr2.fa
inst/samples/refs/chr3.fa
man/Rbowtie-package.Rd man/Rbowtie.Rd man/SpliceMap.Rd
src/AUTHORS
src/LICENSE
src/MANUAL
src/MANUAL.markdown
src/Makefile
src/Makefile.win
src/NEWS
src/SeqAn-1.1/GPL.txt
src/SeqAn-1.1/LGPL.txt
src/SeqAn-1.1/README.txt
src/SeqAn-1.1/platform_linux_gcc.h
src/SeqAn-1.1/platform_windows_mingw.h
src/SeqAn-1.1/platform_windows_vs.h
src/SeqAn-1.1/seqan/basic.h
src/SeqAn-1.1/seqan/basic/basic_aggregates.h
src/SeqAn-1.1/seqan/basic/basic_allocator_interface.h
src/SeqAn-1.1/seqan/basic/basic_allocator_multipool.h
src/SeqAn-1.1/seqan/basic/basic_allocator_simple.h
src/SeqAn-1.1/seqan/basic/basic_allocator_singlepool.h
src/SeqAn-1.1/seqan/basic/basic_allocator_to_std.h
src/SeqAn-1.1/seqan/basic/basic_alphabet_interface.h
src/SeqAn-1.1/seqan/basic/basic_alphabet_interface2.h
src/SeqAn-1.1/seqan/basic/basic_alphabet_simple.h
src/SeqAn-1.1/seqan/basic/basic_alphabet_simple_tabs.h
src/SeqAn-1.1/seqan/basic/basic_alphabet_trait_basic.h
src/SeqAn-1.1/seqan/basic/basic_compare.h
src/SeqAn-1.1/seqan/basic/basic_converter.h
src/SeqAn-1.1/seqan/basic/basic_counted_ptr.h
src/SeqAn-1.1/seqan/basic/basic_debug.h
src/SeqAn-1.1/seqan/basic/basic_definition.h
src/SeqAn-1.1/seqan/basic/basic_forwards.h
src/SeqAn-1.1/seqan/basic/basic_generated_forwards.h
src/SeqAn-1.1/seqan/basic/basic_holder.h
src/SeqAn-1.1/seqan/basic/basic_host.h
src/SeqAn-1.1/seqan/basic/basic_iterator.h
src/SeqAn-1.1/seqan/basic/basic_iterator_adapt_std.h
src/SeqAn-1.1/seqan/basic/basic_iterator_adaptor.h
src/SeqAn-1.1/seqan/basic/basic_iterator_base.h
src/SeqAn-1.1/seqan/basic/basic_iterator_position.h
src/SeqAn-1.1/seqan/basic/basic_iterator_simple.h
src/SeqAn-1.1/seqan/basic/basic_metaprogramming.h
src/SeqAn-1.1/seqan/basic/basic_operator.h
src/SeqAn-1.1/seqan/basic/basic_pointer.h
src/SeqAn-1.1/seqan/basic/basic_profile.h
src/SeqAn-1.1/seqan/basic/basic_proxy.h
src/SeqAn-1.1/seqan/basic/basic_tag.h
src/SeqAn-1.1/seqan/basic/basic_transport.h
src/SeqAn-1.1/seqan/basic/basic_type.h
src/SeqAn-1.1/seqan/basic/basic_volatile_ptr.h
src/SeqAn-1.1/seqan/file.h
src/SeqAn-1.1/seqan/file/chunk_collector.h
src/SeqAn-1.1/seqan/file/cstream.h
src/SeqAn-1.1/seqan/file/file_array.h
src/SeqAn-1.1/seqan/file/file_base.h
src/SeqAn-1.1/seqan/file/file_format.h
src/SeqAn-1.1/seqan/file/file_format_cgviz.h
src/SeqAn-1.1/seqan/file/file_format_fasta.h
src/SeqAn-1.1/seqan/file/file_format_fasta_align.h
src/SeqAn-1.1/seqan/file/file_format_guess.h
src/SeqAn-1.1/seqan/file/file_format_raw.h
src/SeqAn-1.1/seqan/file/file_forwards.h
src/SeqAn-1.1/seqan/file/file_generated_forwards.h
src/SeqAn-1.1/seqan/file/meta.h
src/SeqAn-1.1/seqan/file/stream.h
src/SeqAn-1.1/seqan/file/stream_algorithms.h
src/SeqAn-1.1/seqan/find.h
src/SeqAn-1.1/seqan/find/find_base.h
src/SeqAn-1.1/seqan/find/find_generated_forwards.h
src/SeqAn-1.1/seqan/find/find_horspool.h
src/SeqAn-1.1/seqan/find/find_multi.h
src/SeqAn-1.1/seqan/find/find_multiple_shiftand.h
src/SeqAn-1.1/seqan/find/find_score.h
src/SeqAn-1.1/seqan/find/find_set_horspool.h
src/SeqAn-1.1/seqan/index.h
src/SeqAn-1.1/seqan/index/index_base.h
src/SeqAn-1.1/seqan/index/index_find.h
src/SeqAn-1.1/seqan/index/index_generated_forwards.h
src/SeqAn-1.1/seqan/index/index_manual_forwards.h
src/SeqAn-1.1/seqan/index/index_qgram_find.h
src/SeqAn-1.1/seqan/index/index_sa_lss.h
src/SeqAn-1.1/seqan/index/shape_base.h
src/SeqAn-1.1/seqan/index/shape_gapped.h
src/SeqAn-1.1/seqan/index/shape_predefined.h
src/SeqAn-1.1/seqan/platform.h
src/SeqAn-1.1/seqan/sequence.h
src/SeqAn-1.1/seqan/sequence/lexical.h
src/SeqAn-1.1/seqan/sequence/segment_base.h
src/SeqAn-1.1/seqan/sequence/segment_infix.h
src/SeqAn-1.1/seqan/sequence/segment_prefix.h
src/SeqAn-1.1/seqan/sequence/segment_suffix.h
src/SeqAn-1.1/seqan/sequence/sequence_forwards.h
src/SeqAn-1.1/seqan/sequence/sequence_generated_forwards.h
src/SeqAn-1.1/seqan/sequence/sequence_interface.h
src/SeqAn-1.1/seqan/sequence/sequence_multiple.h
src/SeqAn-1.1/seqan/sequence/sequence_shortcuts.h
src/SeqAn-1.1/seqan/sequence/std_string.h
src/SeqAn-1.1/seqan/sequence/string_alloc.h
src/SeqAn-1.1/seqan/sequence/string_array.h
src/SeqAn-1.1/seqan/sequence/string_base.h
src/SeqAn-1.1/seqan/sequence/string_cstyle.h
src/SeqAn-1.1/seqan/sequence/string_packed.h
src/SeqAn-1.1/seqan/sequence/string_pointer.h
src/SeqAn-1.1/seqan/sequence/string_stack.h
src/SeqAn-1.1/seqan/sequence/string_value_expand.h
src/SpliceMap/LICENSE
src/SpliceMap/Makefile
src/SpliceMap/Makefile.win
src/SpliceMap/SpliceMap_utils_QuasR.cpp
src/SpliceMap/SpliceMap_utils_QuasR.h
src/SpliceMap/amalgamateSAM.cpp
src/SpliceMap/amalgamateSAM.h
src/SpliceMap/cfgfile.cpp
src/SpliceMap/cfgfile.h
src/SpliceMap/fuseReorder.cpp
src/SpliceMap/getSpliceMapUnmapped.cpp
src/SpliceMap/main.cpp
src/SpliceMap/main.h
src/SpliceMap/params.cpp
src/SpliceMap/params.h
src/SpliceMap/runSpliceMap_QuasR.cpp
src/SpliceMap/runSpliceMap_QuasR.h
src/SpliceMap/sortsam.cpp
src/SpliceMap/sortsam.h
src/TUTORIAL
src/VERSION
src/aligner.h
src/aligner_0mm.h
src/aligner_1mm.h
src/aligner_23mm.h
src/aligner_metrics.h
src/aligner_seed_mm.h
src/alphabet.cpp
src/alphabet.h
src/annot.cpp
src/annot.h
src/assert_helpers.h
src/auto_array.h
src/binary_sa_search.h
src/bitpack.h
src/bitset.h
src/blockwise_sa.h
src/bowtie
src/bowtie-build
src/bowtie-inspect
src/bowtie_build_main.cpp
src/bowtie_inspect.cpp
src/bowtie_main.cpp
src/btypes.h
src/ccnt_lut.cpp
src/chaincat.cpp
src/color.cpp
src/color.h
src/color_dec.cpp
src/color_dec.h
src/diff_sample.h
src/ebwt.cpp
src/ebwt.h
src/ebwt_build.cpp
src/ebwt_search.cpp
src/ebwt_search_backtrack.h
src/ebwt_search_util.cpp
src/ebwt_search_util.h
src/edit.cpp
src/edit.h
src/endian_swap.h
src/fast_mutex.h
src/filebuf.h
src/formats.h
src/hit.cpp
src/hit.h
src/hit_set.cpp
src/hit_set.h
src/log.cpp
src/log.h
src/mm.h
src/multikey_qsort.h
src/pat.cpp
src/pat.h
src/pool.h
src/processor_support.h
src/qual.cpp
src/qual.h
src/random_source.h
src/random_test.cpp
src/range.h
src/range_cache.h
src/range_chaser.h
src/range_source.h
src/ref_aligner.cpp
src/ref_aligner.h
src/ref_read.cpp
src/ref_read.h
src/reference.h
src/refmap.cpp
src/refmap.h
src/row_chaser.h
src/sam.cpp
src/sam.h
src/search_1mm_phase1.c
src/search_1mm_phase2.c
src/search_23mm_phase1.c
src/search_23mm_phase2.c
src/search_23mm_phase3.c
src/search_exact.c
src/search_globals.h
src/search_seeded_phase1.c
src/search_seeded_phase2.c
src/search_seeded_phase3.c
src/search_seeded_phase4.c
src/sequence_io.h
src/shmem.cpp
src/shmem.h
src/str_util.h
src/third_party/cpuid.h
src/threading.h
src/timer.h
src/tinythread.cpp
src/tinythread.h
src/tokenize.h
src/word_io.h
src/zbox.h
vignettes/Rbowtie-Overview.Rnw
vignettes/Rbowtie-refs.bib
Bioconductor-mirror/Rbowtie documentation built on May 31, 2017, 11:41 p.m.