Bioconductor-mirror/Rcade: R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
Version 1.19.0

Rcade (which stands for "R-based analysis of ChIP-seq And Differential Expression") is a tool for integrating ChIP-seq data with differential expression summary data, through a Bayesian framework. A key application is in identifing the genes targeted by a transcription factor of interest - that is, we collect genes that are associated with a ChIP-seq peak, and differential expression under some perturbation related to that TF.

Getting started

Package details

AuthorJonathan Cairns
Bioconductor views ChIPSeq DifferentialExpression GeneExpression Genetics Sequencing Transcription
MaintainerJonathan Cairns <[email protected]>
LicenseGPL-2
Version1.19.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/Rcade")
Bioconductor-mirror/Rcade documentation built on May 31, 2017, 11:41 p.m.