Files in Bioconductor-mirror/Rhtslib
HTSlib high-throughput sequencing library as an R package

.gitattributes
.gitignore
.gitmodules
DESCRIPTION
NAMESPACE
R/zzz.R README.md
Rhtslib_build_guide.org
build_htslib_on_493_toolchain.md
cleanup
configure
man/Rhtslib-package.Rd man/pkgconfig.Rd
src/Makevars
src/Makevars.win
src/Rhtslib.c
src/htslib/.gitattributes
src/htslib/.gitignore
src/htslib/.travis.yml
src/htslib/INSTALL
src/htslib/LICENSE
src/htslib/Makefile.am
src/htslib/README
src/htslib/README.md
src/htslib/aclocal.m4
src/htslib/bgzf.c
src/htslib/bgzf_faidx_config.h
src/htslib/bgzip.c
src/htslib/configure.ac
src/htslib/cram/cram.h
src/htslib/cram/cram_codecs.c
src/htslib/cram/cram_codecs.h
src/htslib/cram/cram_decode.c
src/htslib/cram/cram_decode.h
src/htslib/cram/cram_encode.c
src/htslib/cram/cram_encode.h
src/htslib/cram/cram_index.c
src/htslib/cram/cram_index.h
src/htslib/cram/cram_io.c
src/htslib/cram/cram_io.h
src/htslib/cram/cram_samtools.c
src/htslib/cram/cram_samtools.h
src/htslib/cram/cram_stats.c
src/htslib/cram/cram_stats.h
src/htslib/cram/cram_structs.h
src/htslib/cram/files.c
src/htslib/cram/mFILE.c
src/htslib/cram/mFILE.h
src/htslib/cram/md5.c
src/htslib/cram/md5.h
src/htslib/cram/misc.h
src/htslib/cram/open_trace_file.c
src/htslib/cram/open_trace_file.h
src/htslib/cram/os.h
src/htslib/cram/pooled_alloc.c
src/htslib/cram/pooled_alloc.h
src/htslib/cram/rANS_byte.h
src/htslib/cram/rANS_static.c
src/htslib/cram/rANS_static.h
src/htslib/cram/sam_header.c
src/htslib/cram/sam_header.h
src/htslib/cram/string_alloc.c
src/htslib/cram/string_alloc.h
src/htslib/cram/thread_pool.c
src/htslib/cram/thread_pool.h
src/htslib/cram/vlen.c
src/htslib/cram/vlen.h
src/htslib/cram/zfio.c
src/htslib/cram/zfio.h
src/htslib/faidx.5
src/htslib/faidx.c
src/htslib/hfile.c
src/htslib/hfile_internal.h
src/htslib/hfile_net.c
src/htslib/hts.c
src/htslib/htsfile.c
src/htslib/htslib.mk
src/htslib/htslib.pc.in
src/htslib/htslib/bgzf.h
src/htslib/htslib/faidx.h
src/htslib/htslib/hfile.h
src/htslib/htslib/hts.h
src/htslib/htslib/hts_defs.h
src/htslib/htslib/kfunc.h
src/htslib/htslib/khash.h
src/htslib/htslib/khash_str2int.h
src/htslib/htslib/klist.h
src/htslib/htslib/knetfile.h
src/htslib/htslib/kseq.h
src/htslib/htslib/ksort.h
src/htslib/htslib/kstring.h
src/htslib/htslib/regidx.h
src/htslib/htslib/sam.h
src/htslib/htslib/synced_bcf_reader.h
src/htslib/htslib/tbx.h
src/htslib/htslib/vcf.h
src/htslib/htslib/vcf_sweep.h
src/htslib/htslib/vcfutils.h
src/htslib/htslib_vars.mk
src/htslib/kfunc.c
src/htslib/knetfile.c
src/htslib/kstring.c
src/htslib/lib/.gitignore
src/htslib/lib/Makefile.am
src/htslib/lib/alloca.c
src/htslib/lib/alloca.in.h
src/htslib/lib/arpa_inet.in.h
src/htslib/lib/close.c
src/htslib/lib/dup2.c
src/htslib/lib/errno.in.h
src/htslib/lib/fcntl.c
src/htslib/lib/fcntl.in.h
src/htslib/lib/fd-hook.c
src/htslib/lib/fd-hook.h
src/htslib/lib/fdatasync.c
src/htslib/lib/fsync.c
src/htslib/lib/getdtablesize.c
src/htslib/lib/getpagesize.c
src/htslib/lib/gettimeofday.c
src/htslib/lib/inttypes.in.h
src/htslib/lib/msvc-inval.c
src/htslib/lib/msvc-inval.h
src/htslib/lib/msvc-nothrow.c
src/htslib/lib/msvc-nothrow.h
src/htslib/lib/netdb.in.h
src/htslib/lib/recv.c
src/htslib/lib/send.c
src/htslib/lib/signal.in.h
src/htslib/lib/stdalign.in.h
src/htslib/lib/stddef.in.h
src/htslib/lib/stdint.in.h
src/htslib/lib/stdlib.in.h
src/htslib/lib/string.in.h
src/htslib/lib/sys_select.in.h
src/htslib/lib/sys_socket.c
src/htslib/lib/sys_socket.in.h
src/htslib/lib/sys_stat.in.h
src/htslib/lib/sys_time.in.h
src/htslib/lib/sys_types.in.h
src/htslib/lib/sys_uio.in.h
src/htslib/lib/time.in.h
src/htslib/lib/unistd.c
src/htslib/lib/unistd.in.h
src/htslib/lib/w32sock.h
src/htslib/m4/.gitignore
src/htslib/m4/00gnulib.m4
src/htslib/m4/absolute-header.m4
src/htslib/m4/alloca.m4
src/htslib/m4/arpa_inet_h.m4
src/htslib/m4/close.m4
src/htslib/m4/dup2.m4
src/htslib/m4/errno_h.m4
src/htslib/m4/extensions.m4
src/htslib/m4/extern-inline.m4
src/htslib/m4/fcntl-o.m4
src/htslib/m4/fcntl.m4
src/htslib/m4/fcntl_h.m4
src/htslib/m4/fdatasync.m4
src/htslib/m4/fsync.m4
src/htslib/m4/getdtablesize.m4
src/htslib/m4/getpagesize.m4
src/htslib/m4/gettimeofday.m4
src/htslib/m4/gnulib-cache.m4
src/htslib/m4/gnulib-common.m4
src/htslib/m4/gnulib-comp.m4
src/htslib/m4/gnulib-tool.m4
src/htslib/m4/include_next.m4
src/htslib/m4/inttypes-pri.m4
src/htslib/m4/inttypes.m4
src/htslib/m4/libtool.m4
src/htslib/m4/longlong.m4
src/htslib/m4/ltoptions.m4
src/htslib/m4/ltsugar.m4
src/htslib/m4/ltversion.m4
src/htslib/m4/lt~obsolete.m4
src/htslib/m4/msvc-inval.m4
src/htslib/m4/msvc-nothrow.m4
src/htslib/m4/multiarch.m4
src/htslib/m4/netdb_h.m4
src/htslib/m4/off_t.m4
src/htslib/m4/signal_h.m4
src/htslib/m4/socketlib.m4
src/htslib/m4/socklen.m4
src/htslib/m4/sockpfaf.m4
src/htslib/m4/ssize_t.m4
src/htslib/m4/stdalign.m4
src/htslib/m4/stddef_h.m4
src/htslib/m4/stdint.m4
src/htslib/m4/stdlib_h.m4
src/htslib/m4/string_h.m4
src/htslib/m4/sys_select_h.m4
src/htslib/m4/sys_socket_h.m4
src/htslib/m4/sys_stat_h.m4
src/htslib/m4/sys_time_h.m4
src/htslib/m4/sys_types_h.m4
src/htslib/m4/sys_uio_h.m4
src/htslib/m4/time_h.m4
src/htslib/m4/unistd_h.m4
src/htslib/m4/warn-on-use.m4
src/htslib/m4/wchar_t.m4
src/htslib/regidx.c
src/htslib/run_tests.sh
src/htslib/sam.5
src/htslib/sam.c
src/htslib/snippet/.gitignore
src/htslib/snippet/_Noreturn.h
src/htslib/snippet/arg-nonnull.h
src/htslib/snippet/c++defs.h
src/htslib/snippet/warn-on-use.h
src/htslib/synced_bcf_reader.c
src/htslib/tabix.1
src/htslib/tabix.c
src/htslib/tbx.c
src/htslib/test/.gitignore
src/htslib/test/Makefile.am
src/htslib/test/auxf#values.sam
src/htslib/test/auxf.fa
src/htslib/test/auxf.fa.fai
src/htslib/test/c1#bounds.sam
src/htslib/test/c1#clip.sam
src/htslib/test/c1#pad1.sam
src/htslib/test/c1#pad2.sam
src/htslib/test/c1#pad3.sam
src/htslib/test/c1.fa
src/htslib/test/c1.fa.fai
src/htslib/test/ce#1.sam
src/htslib/test/ce#2.sam
src/htslib/test/ce#5.sam
src/htslib/test/ce#5b.sam
src/htslib/test/ce#large_seq.sam
src/htslib/test/ce#tag_depadded.sam
src/htslib/test/ce#tag_padded.sam
src/htslib/test/ce#unmap.sam
src/htslib/test/ce#unmap1.sam
src/htslib/test/ce#unmap2.sam
src/htslib/test/ce.fa
src/htslib/test/ce.fa.fai
src/htslib/test/compare_sam.pl
src/htslib/test/fieldarith.c
src/htslib/test/fieldarith.sam
src/htslib/test/hfile.c
src/htslib/test/sam.c
src/htslib/test/test-regidx.c
src/htslib/test/test-vcf-api.c
src/htslib/test/test-vcf-api.out
src/htslib/test/test-vcf-sweep.c
src/htslib/test/test-vcf-sweep.out
src/htslib/test/test.pl
src/htslib/test/test_view.c
src/htslib/test/test_view.pl
src/htslib/test/xx#blank.sam
src/htslib/test/xx#large_aux.sam
src/htslib/test/xx#large_aux2.sam
src/htslib/test/xx#minimal.sam
src/htslib/test/xx#pair.sam
src/htslib/test/xx#rg.sam
src/htslib/test/xx#triplet.sam
src/htslib/test/xx#unsorted.sam
src/htslib/test/xx.fa
src/htslib/test/xx.fa.fai
src/htslib/vcf.5
src/htslib/vcf.c
src/htslib/vcf_sweep.c
src/htslib/vcfutils.c
src/htslib/version.h
src/winlib/i386/libhts.a
src/winlib/x64/libhts.a
tools/Makefile.in
tools/compile
tools/config.guess
tools/config.h.in
tools/config.sub
tools/configure
tools/depcomp
tools/install-sh
tools/lib_Makefile.in
tools/ltmain.sh
tools/missing
tools/test-driver
tools/test_Makefile.in
vignettes/Rhtslib.Rmd
Bioconductor-mirror/Rhtslib documentation built on Aug. 15, 2017, 5:18 p.m.